BAC Information

Click to search

BAC

Clone NameMSMg01-512G01
Chromosome8 (Build37)
Map Location 91,674,489 - 91,769,111
singlet/doubletdoublet
Overlap geneEG625801, EG384862
Upstream geneHeatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512G01.T7 (MSMg01no512_g01.b1)MSMg01-512G01.TJ (MSMg01no512_g01.g1)
ACCAG585351AG585352
length744740
length of high quality
(start - end)
209 (69 - 277)337 (68 - 404)
definitionCHROMAT_FILE: MSMg01no512_g01.b1 PHD_FILE: MSMg01no512_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:30 2005CHROMAT_FILE: MSMg01no512_g01.g1 PHD_FILE: MSMg01no512_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,768,906 - 91,769,111)(91,674,489 - 91,674,825)
sequence
TTTGACGCCGCTAAACGACTCACAATCCAAAGAGGAGCCGCGGAATTCTT
CCCTTCCTGAGACTCCCTCGCTGTCTGCTGGGACGGCTGTCTGAGGGCAA
CACGGGGGTGGGGATATCTCAAGAGTAGAAGGCCAGCCAGGGTCCCTTAC
TTCGTACCTTTACGGCAGCATTAAATTCTTGTAAAAAGTCGGGGGCAAAA
TCGAAGAGAAAGCCTTCGAAATGTGTGCGCTGAAGTTGTTGCTCACAGTA
ATATAAGCACAAGAATTTATTGGGCGGCCGTGTTTCCCCCTTTCTCTGTC
CTCTCCTGTGTTCTTACAGAGCTTGAGTTCACTATTAGAAAAGCTGGCTT
CTCCAGCTTTGTTGGACTTGGACCATGTTTTCCCCGGATAATAAGAATGC
ATCCTTTGGGCCAACAGCTTGGGAACACTCCGTTAATCATTTTAGCGTTC
CAGGTGCAAATTCTCAAGTTATGATTGTCCCTTTCTTTTTGGTCAATAGT
TGTTTTGGCATGGTCATAATTGTAATGGTTTCTCTTGTCCTTTAAGACCG
TCTAAGCGAAGCCACACCTTTTTGGAGGGCCTAAGCATCCTCCTAAAGCT
TTTAGCTGGAAATGTGTTATTTTATACCCTATACCCATGGAAAAATGGAC
TCTCATTAATATTTTTTAAGTCACCCATATAGGTTCCGCAAACTTAGGGT
GCGCTGTAACCTCCCAATTTATATAGCTTCTTAATGTACTATTA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGAGTGGTCTTCAGTAGCATATGGTTGGCAG
AGACCCTGGGCCACTTTCTGTTTTCCTTCTGGTCATGACTGAAGTCTTTC
AGGTTCTAGCACAGTCTGCTTTCTAGAAAGGAGTACATGGGCCTCTATAC
CACTCACTGTAGGGGGTTTCAGTCTCTGATGTACTTGCAGAGACTTTTGG
GAGCATGACTTTCTATTAGGAAACACAGGCTGGCACGTTCCAATCTCATC
AGTGACTTCTTTTCTTTCTCCATGAACAAGGGTAAGATAAATGCCTTCTC
TATTGTTTGATTTCCCTGTCTGCAAAGTGGACATAGTGCCAGTAGCTACT
TTGTCGGGTTATCTTAGTCTGTTTTTTTTTTCTGTTATAAAATTTCATAG
ACTGAGTAATTTATGAAAAGCATAAGTATCTGTGACTTATGTTTCTGTAG
ATTGTTGGTAAGTCTGATCGCAGGTTACTGATGTCTGATATGCTTCTGGC
GAGGGCATGTCCTTGCCTCAATACATGGGCTTATCACTTGTTATACACAT
TTGGATCTGTTTTTTTCCAAGCTACTTTTGCTTTTCTCAGGAACCTCTTT
TTATGAATGTTATTTCTATCCTTCCCATTTTTCCAAAAACTTCTGAATGT
TCTATATTTTGGCCTGTTAGGGCCCTCATCTTAATAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_g01.b1 MSMg01no512_g01.b1 CHROMAT_FILE:
MSMg01no512_g01.b1 PHD_FILE: MSMg01no512_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:30 2005
         (209 letters)



>mm_chr8_91768706_91769314
          Length = 609

 Score =  398 bits (206), Expect = e-116
 Identities = 206/206 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgctgtctgctgggacggctgtctgagggcaacacgggggtggggatatctcaagagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cgctgtctgctgggacggctgtctgagggcaacacgggggtggggatatctcaagagtag 347

                                                                       
Query: 61  aaggccagccagggtcccttacttcgtacctttacggcagcattaaattcttgtaaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaggccagccagggtcccttacttcgtacctttacggcagcattaaattcttgtaaaaag 287

                                                                       
Query: 121 tcgggggcaaaatcgaagagaaagccttcgaaatgtgtgcgctgaagttgttgctcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcgggggcaaaatcgaagagaaagccttcgaaatgtgtgcgctgaagttgttgctcacag 227

                                     
Query: 181 taatataagcacaagaatttattggg 206
           ||||||||||||||||||||||||||
Sbjct: 226 taatataagcacaagaatttattggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no512_g01.g1 MSMg01no512_g01.g1 CHROMAT_FILE:
MSMg01no512_g01.g1 PHD_FILE: MSMg01no512_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:30 2005
         (337 letters)



>mm_chr8_91674289_91675025
          Length = 737

 Score =  629 bits (325), Expect = 0.0
 Identities = 334/337 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgagtggtcttcagtagcatatggttggcagagaccctgggccactttctgttttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgagtggtcttcagtagcatatggttggcagagaccctgggccactttctgttttcct 260

                                                                       
Query: 61  tctggtcatgactgaagtctttcaggttctagcacagtctgctttctagaaaggagtaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctggtcatgactgaagtctttcaggttctagcacagtctgctttctagaaaggagtaca 320

                                                                       
Query: 121 tgggcctctataccactcactgtagggggtttcagtctctgatgtacttgcagagacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcctctataccactcactgtagggggtttcagtctctgatgtacttgcagagacttt 380

                                                                       
Query: 181 tgggagcatgactttctattaggaaacacaggctggcacgttccaatctcatcagtgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggagcatgactttctattaggaaacacaggctggcacgttccaatctcatcagtgact 440

                                                                       
Query: 241 tcttttctttctccatgaacaagggtaagataaatgccttctctattgtttgatttccct 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaacctttctccatgaacaagggtaagataaatgccttctctattgtttgatttccct 500

                                                
Query: 301 gtctgcaaagtggacatagtgccagtagctactttgt 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtctgcaaagtggacatagtgccagtagctactttgt 537


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 737
Length adjustment: 9
Effective length of query: 328
Effective length of database: 728
Effective search space:   238784
Effective search space used:   238784
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)