Query= MSMg01no512_h20.b1 MSMg01no512_h20.b1 CHROMAT_FILE:
MSMg01no512_h20.b1 PHD_FILE: MSMg01no512_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:39 2005
(582 letters)
>mm_chr8_126643559_126644540
Length = 982
Score = 847 bits (438), Expect = 0.0
Identities = 451/456 (98%), Gaps = 2/456 (0%)
Strand = Plus / Minus
Query: 129 ggttggggaggatcagagctgctgatgtcagagctctaaacccagagtgaggggaaatgg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggttggggaggatcagagctgctgatgtcagagctctaaacccagagtgaggggaaatgg 570
Query: 189 tggactatgggaggtcacaggtcaaaagccctgtctgcaatgtgcttagtggctactgcc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tggactatgggaggtcacaggtcaaaagccctgtctgcaatgtgcttagtggctactgcc 510
Query: 249 cttccctcagcaccaccagcaggatggtgaatcccaggaaggcagtctcaataaagggac 308
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cttccctcggcaccaccagcaggatggtgaatcccaggaaggcagtctcaataaagggac 450
Query: 309 ctcccagatcctggcatttgaggccataacaggcactgagtgccagagacactgaggaac 368
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 ctcccagatcctggcatttgaggccataacaggcactgagtgccagagacattgaggaac 390
Query: 369 actctgcttctcctatgggctgcctacccatcggtctctccaataaaaacagtagcatgg 428
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 389 actctgcttctcctatgggctgcctaccaatcggtctctccaataaaaacagtagcatgg 330
Query: 429 ctagctcagtagtggagtgtttgcctggcatgtgtgaagatgagttacatcttcagccac 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctagctcagtagtggagtgtttgcctggcatgtgtgaagatgagttacatcttcagccac 270
Query: 489 atgtgggaatgtacagaaagaaaccaaagtcttgttacggtaaatctcctcccaaatatg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atgtgggaatgtacagaaagaaaccaaagtcttgttacggtaaatctcctcccaaatatg 210
Query: 549 caccggcaatgaaaac--atgattacacgctgtgca 582
|||||||||||||||| ||||||||||||||||||
Sbjct: 209 caccggcaatgaaaacatatgattacacgctgtgca 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no512_h20.g1 MSMg01no512_h20.g1 CHROMAT_FILE:
MSMg01no512_h20.g1 PHD_FILE: MSMg01no512_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:40 2005
(548 letters)
>mm_chr8_126625640_126626585
Length = 946
Score = 949 bits (491), Expect = 0.0
Identities = 533/548 (97%), Gaps = 2/548 (0%)
Strand = Plus / Plus
Query: 1 ttttatttttgtatcattactattattttggaatgtttttgtgtctgtaatgaaatagct 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ttttatttttgtatcattactattatcttggaatgtttttgtgtctgtaatgaaatagct 260
Query: 61 tgggaatgaacctcaagtcttaacatgagattcacctgtgtcttatacatttcatctgag 120
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 261 tgggaatgaacctcaagtcttaacatgagactcacctgtgtcttatacatttcatcccag 320
Query: 121 agcctgtggcagagttttacatgatgattcatctgggtggctattggctgtggctgatca 180
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 321 agcctgtggcagagttttacatgatgattcatctggctggctactggctgtggctgatca 380
Query: 181 cctgaggtcgggggtggaattttgacacttgtatttttcgtgatagcatcaaaatgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgaggtcgggggtggaattttgacacttgtatttttcgtgatagcatcaaaatgtttt 440
Query: 241 agattctagaatagaattggattttaaatttgggggttagggatgttgagcctgcaacta 300
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 441 agattctagaatagaattggattttaaatttgggggttaaggatgttgaacctgcaacta 500
Query: 301 tagagagtaggtctggaaggagaaggagagtggggagacatggtgggnggcggggaggca 360
||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 501 tagagagtaggtctggaaggagaaggagagtggggagacatggcggg--gcagggaggca 558
Query: 361 acggtggggctgcgggaaggagaggcagtagtgggggcagatactgcggatacagggacg 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 acggtggggctgcgggaaggagaggcagtagtgggggcagatactgcagatacagggacg 618
Query: 421 aggacgggaacctgaggggtcctagtggctacagggttgggaatggggtgaagtagctga 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggacgggagcctgaggggtcctagtggctacagggttgggaatggggtgaagtagctga 678
Query: 481 ggtgggccaagggtgtgtctgactggatagaangagcacacaggaggcaggccaaggcca 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 ggtgggccaagggtgtgtctgactggatagaaggagcacacaggaggcaggccaaggcca 738
Query: 541 gggcgtta 548
||||||||
Sbjct: 739 gggcgtta 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 946
Length adjustment: 10
Effective length of query: 538
Effective length of database: 936
Effective search space: 503568
Effective search space used: 503568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
