BAC Information

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BAC

Clone NameMSMg01-512I09
Chromosome8 (Build37)
Map Location 72,337,577 - 72,337,820
singlet/doubletsinglet
Overlap geneGmip
Upstream geneInts10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1
Downstream geneEdg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512I09.T7 (MSMg01no512_i09.b1)MSMg01-512I09.TJ (MSMg01no512_i09.g1)
ACCAG585463AG585464
length7441,178
length of high quality
(start - end)		244 (63 - 306)---
definitionCHROMAT_FILE: MSMg01no512_i09.b1 PHD_FILE: MSMg01no512_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:42 2005CHROMAT_FILE: MSMg01no512_i09.g1 PHD_FILE: MSMg01no512_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GTATTCCCGGCTGAAGGAGCAGAAGCGCATGGTAAGGCCAGGCGTGGGTG
GGCCCTGCCCGGAAGAACAGAGTCCTCTGCAGGCCAACGGCTTATGGTCC
TCTTGCTGCCTCCAAGAATGAGGCAGTGCAGGCACTGCGGCGCTCCGAGC
TCCAGTACATTCAACGCAGAGAGGACCTGAGGGCACGCTCCCAGGGGTCC
CCTGAGGACCCTCCTTCCCAGGCATCTCCTGGATCCAACAAGCAACAGGA
GCGCAGACGGTTTTTTCCGAGAGGAGGCACAGGCCAAGGTCGGAAACACA
GTACCGAGATTCCCTAACGTCTAGTCGCTCACCTCTCTCTAACTCCCAAC
CACTTAAGCCTTGGTTTCCCCAGGCGCATGAGGCGGAGGCTCTGTACCAT
GCCTGTGTCCGGGAGGCCAATTCTCGCCATCAGGATCTGGAGACCACCAA
GCGGCGGATAGTGTCACATGTGCGCAAGCTGGTGCTGCTAGGAGACGAAG
TGCTTAGGCGGTTAAGGCCCTCCTTCCACAGTCACCCTTGTTTCATTGTC
CTTAGGCACCACCCCTGAGCCCCCTGTACACCATCTTGACTGTAGGTCCC
ATACCCTGATGACAACCTAAACCTAGTCCTACTGCCTACCAATGTAAGGC
CCCCTCCTCCGACATTGGCTTTGTTCTGTAAGGGTTAGGTTTAN

AGTTGGTGAGCTGGTTACTCGCGAGTAGAAGCGCCTTCTCGTTCGTCGGT
TCCGCGTCGTTGGGTCGTGGTCGCTCGCCACTCGACGTAAGGTTGCTCGC
CGAGATGAGAAGACACACGAAGATCTCGCTCTCTTGTTCGTCTCNTGTCG
GTCACGCGATCGTGTTCGACTACTTCGCTTCGTCGTTTCCCGTCCTGCTC
GCGCCTGTCTGCAATAATGGCGCGGTCCTGCCTCACCAGATTTTCCGACG
ACCGATGCCATGATCTGCAGTTAGCGTCCCTATTGCCATCGCAGCAGACG
GACGGTTATATAATTCTTCACGACGTACTCCACGCCGCGGATCATGGGTG
CTTTCGTACGCCTAGAAGACGTGCGTTATAGGACGCTGACGGACATGGGT
GTTGCGGCCGCGTCGACGTGGTGGTCGGGCGGGCTCGGTGTTACATGTCN
TGTTACATTATTATTAACGATAGCATACGACGATATAACTCTCAGACGAC
ACACGACCCCTCGCGATGTATAGTTGTATGATCTTACGATTACATTCTCA
TTATCACGCACTCACTCGTCTGTATTTGGTGTCGCCACTCGACTCACATC
TCGATATTACGAATACTTTGATATATTACGGCCGTCAGCTGAGTCGANCG
GATATAAGATGAAGTGAGAATGAAAGCATACGGATCCGATCGATATATAC
GATTCTGCGTATGGATCGCGCGCGGTACAAGAAGAGCGGCATCGCATACG
ACGTCGTNCGATTCTACGCGCGGTGTTGTCGGAACGGAACACATTGACTC
CACGCATAGTATGTTCAACCACCGCATCGCGGCCCGAGCTATATGGCTGA
GAGCGCGCCGCCGACGGTATACGTATATTAGCCGTGACGGACGACGTCTC
GTCGCCGGATGCCATATGTACATATAGCAGATCGCGGTGTGTCGCCACAC
ATACAACAAACACAGGGGTGTAACGGATTCGTAGAGTCGTCGATGGCGCG
CGATCGAACTTCTGATGATACTTGCGATCGCACGGCGGATCCTGTGGAGT
ATATTCATGATTATGACAAATCGAATACGAGAGCGCGCGCGACGCCGAAT
CTAAGAGGACTTATAGTGACATCGTGAGCGTGCGGTGCAGCGACGTCGGC
TNTGAGTCGTGCAATGAAGACGAGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_i09.b1 MSMg01no512_i09.b1 CHROMAT_FILE:
MSMg01no512_i09.b1 PHD_FILE: MSMg01no512_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:42 2005
         (244 letters)



>mm_chr8_72337377_72338020
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggagcagaagcgcatggtaaggccaggcgtgggtgggccctgcccggaagaacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaggagcagaagcgcatggtaaggccaggcgtgggtgggccctgcccggaagaacagag 260

                                                                       
Query: 61  tcctctgcaggccaacggcttatggtcctcttgctgcctccaagaatgaggcagtgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctctgcaggccaacggcttatggtcctcttgctgcctccaagaatgaggcagtgcagg 320

                                                                       
Query: 121 cactgcggcgctccgagctccagtacattcaacgcagagaggacctgagggcacgctccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgcggcgctccgagctccagtacattcaacgcagagaggacctgagggcacgctccc 380

                                                                       
Query: 181 aggggtcccctgaggaccctccttcccaggcatctcctggatccaacaagcaacaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggtcccctgaggaccctccttcccaggcatctcctggatccaacaagcaacaggagc 440

               
Query: 241 gcag 244
           ||||
Sbjct: 441 gcag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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