BAC Information

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BAC

Clone NameMSMg01-512L13
Chromosome8 (Build37)
Map Location 6,824,131 - 6,824,249
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512L13.T7 (MSMg01no512_l13.b1)MSMg01-512L13.TJ (MSMg01no512_l13.g1)
ACCAG585615AG585616
length764765
length of high quality
(start - end)		417 (36 - 452)119 (195 - 313)
definitionCHROMAT_FILE: MSMg01no512_l13.b1 PHD_FILE: MSMg01no512_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:59 2005CHROMAT_FILE: MSMg01no512_l13.g1 PHD_FILE: MSMg01no512_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTC
TATTCCAGACCTTTGAGGTAGAAAGACACACACTTTTGATCTAGATCTGG
AAGCTGCAAGGCACACCTTTAGTCTGGGCTATACCTTCTGCTCAGAGCCT
ATCTCTAGAGAGAACACTGAAGAAGGAAGCTCGTGCTTTTTGCTCACTTT
CTCAGTCCTACCAAGTCCGTTCCTTCACTGGTATTAGGACCCTACTTCTT
CAGAATTTCAGCACCTCCTGAAGACCACAGAGAGACACACAGCCCTATGG
ACTGAGCAACTTCAACGTCCTTGGACTTTCTGTTCATAGCCTGACCTTGT
TGGTTTAGTTGAATAGTAGTCTGTAAGGAATTCTAATACATCCTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNN
NNNNNNNNNNNNNNTTNNTTTTNTTTTTTTTNTNNTTTTTTTTTTTNTNT
TTNTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTNTNTNTTTTTTTTTTTTTN
TTTTNTTTTTTTTTTTTNNTTNTTTTTNTTTTTNTTTTTTTTTTTTTTTT
TTTTTTTTTTTNNTTTTTTNNCCTTTTTTTTTNNTTTTTTTNNTTTTTNT
TTTTTTTTNTNNNNTNNTNNNNTTTTTNTTTTTNTNTNTTTTTTTTTTTT
TTTTTTTNNTTTTN

GGTTGGGCCGTCGTCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATCTATCACTCACCTATGATCTTTCTAAGGAAGTGA
TGGTGAAATATCTTCAGAGTCAGAGGTTGAGAATCCCAGCCATCTCTTGG
AGTTAGCATTAATGGACTAAATAGTCTCACAATACCAAGTTTCCAGGAAC
TTGCATAGAACACCTGCTAATGGGCTTTCCTATTCTGAAGCCTTCCCATC
AGTGGCAGTTTAAATGTATAATTAGTTTTCAAATTTTGTAATGTTGCATC
AATTACTGCTCATTGCGAAAGCTGTTAATTTTATACATGAAAACAACTTT
TAAGGTTTTCAACTGATTATATGAGTGGGAGAAAGGATTAATAGATTATA
TAAAAGTTGTAAAACTATGCTAGCTAAAGTTCTGGAATTTTTGAAGCTAG
TGGTGTCTGCAAAATTTTAAACTATGATGCTTTAGTAGAATAATGATTAG
AGTAGACTTGTGACGGCTGGCCATGATGAAATTGCCTTCTTGAGTCATGA
TTGTAATTTTAACCCGGAAACATCCTACAAGCTTTGTTGAAGTTTTTTCG
CATTTCTTTAATCCTTTGTTACCCTTTTGTAGGGTATGAGTCACTAAATG
AAAATACTCCGGACATATTAACAATTTTACTATGGGATCATTATTAATCA
AACCGGAATTATTCTTTTACATACTTTTATCTGAACCCTGGGTATTCTGT
CGGGACTTTACATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_l13.g1 MSMg01no512_l13.g1 CHROMAT_FILE:
MSMg01no512_l13.g1 PHD_FILE: MSMg01no512_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:59 2005
         (119 letters)



>mm_chr8_6823931_6824449
          Length = 519

 Score =  207 bits (107), Expect = 2e-58
 Identities = 116/119 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaacttgcatagaacacctgctaatgggctttcctattctgaagccttcccatcagtg 60
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 aggaacttgcagagaacacctgctaatgggctttcctattttgaagccttcccatcagtg 260

                                                                      
Query: 61  gcagtttaaatgtataattagttttcaaattttgtaatgttgcatcaattactgctcat 119
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 259 gcagtttaaatgtataattagttttcaaattttgtaatgttgcagcaattactgctcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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