Query= MSMg01no514_f04.b1 MSMg01no514_f04.b1 CHROMAT_FILE:
MSMg01no514_f04.b1 PHD_FILE: MSMg01no514_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:10 2005
(629 letters)
>mm_chr8_83781834_83782862
Length = 1029
Score = 687 bits (355), Expect = 0.0
Identities = 358/359 (99%)
Strand = Plus / Minus
Query: 271 agtcctcagtccacagaggaagcctgcagatgatggttctggtatcagtggaagaatcag 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 agtcctcagtccacagaggaagcctgcagatgatggttctggtatcagtggaagaatcag 970
Query: 331 cagggtaaatagagaaaataaactgggtgttaatagagagagtcaggagatcaaagtgga 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 cagggtaaatagagaaaataaactgggtgttaatagagagagtcaggagatcaaagtgga 910
Query: 391 agtcattgtccctctgccttgcccttgttatctggtctgctagcagaaggtaagggccac 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 agtcattgtccctctgccttgcccttgttatctggtctgctagcagaaggtaagggccac 850
Query: 451 atttgaaaaagttttttcacataaattaaggagataatggcaatcccttagctgaggtcc 510
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 849 atttgaaaaagttttttcacataaattaaggagataatggcaatcccttagttgaggtcc 790
Query: 511 ctacttggataaatctattttgtgatgaatttatcttaaaactaatcatcataggagggg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctacttggataaatctattttgtgatgaatttatcttaaaactaatcatcataggagggg 730
Query: 571 agaagtcatcttgaacctatcttcttgaactatgtggctttgactctgtgtgggatcaa 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agaagtcatcttgaacctatcttcttgaactatgtggctttgactctgtgtgggatcaa 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_f04.g1 MSMg01no514_f04.g1 CHROMAT_FILE:
MSMg01no514_f04.g1 PHD_FILE: MSMg01no514_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:10 2005
(577 letters)
>mm_chr8_83606060_83607036
Length = 977
Score = 1096 bits (567), Expect = 0.0
Identities = 576/581 (99%), Gaps = 4/581 (0%)
Strand = Plus / Plus
Query: 1 tggtgtcaacaataaggtagagagtaaatgagaaagatactggacacagacctttggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tggtgtcaacaataaggtagagagtaaatgagaaagatactggacacagacctttggcat 256
Query: 61 ccacatacatgctcttacatacatacctccaacacacacacacacacacacacacacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccacatacatgctcttacatacatacctccaacacacacacacacacacacacacacaca 316
Query: 121 cacacacacacacacac----ccttaaaatgtggacctaaagtgttaatatttaattcta 176
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacacacacacacacacacacccttaaaatgtggacctaaagtgttaatatttaattcta 376
Query: 177 tttcttggaccagatgtgcttctattttctatacctttttatagaaagaaatgtaatgcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttcttggaccagatgtgcttctattttctatacctttttatagaaagaaatgtaatgcc 436
Query: 237 agtgccaattttgggttgtgggtttgtccaacaagatctgtgccttacatgtttgcacgc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agtgccaattttgggttgtgggtttgtccaacaagatctgtgccttacatgtttgcacgc 496
Query: 297 attatagtcaggagaggagtatgtctctgattagtagaatactagaagattaatgtttct 356
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 497 attatagtcaggagaggagtatgtctctgattagtagaatactagaagattcatgtttct 556
Query: 357 tttaaattctcacagcctcaacttctactatgtgttgaaaagtgtttttgattgtgattt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttaaattctcacagcctcaacttctactatgtgttgaaaagtgtttttgattgtgattt 616
Query: 417 tccaatgatataaataacatatgaatatatttcagtgcaatttttcaaacaaaataatac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccaatgatataaataacatatgaatatatttcagtgcaatttttcaaacaaaataatac 676
Query: 477 tgactactatatagtctattttacccagtaagaacattttccctgtattacctaaattaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgactactatatagtctattttacccagtaagaacattttccctgtattacctaaattaa 736
Query: 537 ttcttggaagtttaggaatgtataacatatataccactatt 577
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttcttggaagtttaggaatgtataacatatataccactatt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
