Query= MSMg01no515_m13.b1 MSMg01no515_m13.b1 CHROMAT_FILE:
MSMg01no515_m13.b1 PHD_FILE: MSMg01no515_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:14 2005
(212 letters)
>mm_chr8_88186263_88186879
Length = 617
Score = 352 bits (182), Expect = e-102
Identities = 204/214 (95%), Gaps = 5/214 (2%)
Strand = Plus / Minus
Query: 2 gaattcaggtcactgtgcttgcacagcacgtttgttttacttgctgagccatctcatcaa 61
||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 479 gaattcaggtcactgggattgcacagtacgtttgttttacttgctgagccatctcatcaa 420
Query: 62 cctcatattaagattcttaatcttgaaagattatggttttaaaaatctatggagtcctaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cctcatattaagattcttaatcttgaaagattatggttttaaaaatctatggagtcctaa 360
Query: 122 ctggtaaatgtaagtattgatcaaacacttgttggtttttgagggggtgttttgtttc-- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctggtaaatgtaagtattgatcaaacacttgttggtttttgagggggtgttttgttttgt 300
Query: 180 ---attttgtaggggttttgtgtgtgtgtgtgtg 210
|||||||||||||| ||||||||||||||||
Sbjct: 299 tttattttgtaggggttgtgtgtgtgtgtgtgtg 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 617
Length adjustment: 9
Effective length of query: 203
Effective length of database: 608
Effective search space: 123424
Effective search space used: 123424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no515_m13.g1 MSMg01no515_m13.g1 CHROMAT_FILE:
MSMg01no515_m13.g1 PHD_FILE: MSMg01no515_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:14 2005
(559 letters)
>mm_chr8_88021221_88022179
Length = 959
Score = 696 bits (360), Expect = 0.0
Identities = 363/364 (99%)
Strand = Plus / Plus
Query: 2 gctttactgacagtcttagttagggctttgctgctgtgaacagacaccatgttcaaggca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttactgacagtcttagttagggctttgctgctgtgaacagacaccatgttcaaggca 60
Query: 62 agtcttataaagacaacatctaattggggctggtttacaggtttagaggttcagtccatt 121
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 agtcttataaagacaacatctaattggggctggcttacaggtttagaggttcagtccatt 120
Query: 122 atcatcaaggcaggagcagggcagcatctaggcagacatggtgcaggggaagctgagagt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcatcaaggcaggagcagggcagcatctaggcagacatggtgcaggggaagctgagagt 180
Query: 182 tttacatctttatctgaaggctgctagtggaagactgattctcaggaagctaggttaagg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttacatctttatctgaaggctgctagtggaagactgattctcaggaagctaggttaagg 240
Query: 242 gtcttacagcccacacccacagtgacacacctactccaacaaactccaacaaggccacac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcttacagcccacacccacagtgacacacctactccaacaaactccaacaaggccacac 300
Query: 302 ctcctaatagtgccactccctggacgagtatatgcaaagcatcacagaaatctttttttt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctcctaatagtgccactccctggacgagtatatgcaaagcatcacagaaatctttttttt 360
Query: 362 tttt 365
||||
Sbjct: 361 tttt 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
