BAC Information

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BAC

Clone NameMSMg01-515P18
Chromosome8 (Build37)
Map Location 90,077,068 - 90,244,049
singlet/doubletdoublet
Overlap gene4933402J07Rik, Zfp423
Upstream geneAbcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819, Cbln1, LOC100040294
Downstream geneLOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515P18.T7 (MSMg01no515_p18.b1)MSMg01-515P18.TJ (MSMg01no515_p18.g1)
ACCAG588090AG588091
length768768
length of high quality
(start - end)		669 (49 - 717)344 (78 - 421)
definitionCHROMAT_FILE: MSMg01no515_p18.b1 PHD_FILE: MSMg01no515_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:32 2005CHROMAT_FILE: MSMg01no515_p18.g1 PHD_FILE: MSMg01no515_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,243,385 - 90,244,049)(90,077,068 - 90,077,408)
sequence
NAAAACTAAAAATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCGGTGTGAGGAGGAAGGAGGAGCTGGCTCAAGGACATCAGTGT
TTTCTACACACACTCAGGCATACACACACATGCATGCACACACGGGCACA
TGCTGCACATAAGCCCTTTGCATTCATGTGCACACACAAGCGTACATACA
TCTGCACCTAAACATATACCTAAGCTATAGTTTACGAAAGAGAAATAAGA
AAACAAACGCTTTGCCCTGAATGTCACCCGTGTATTTTCCCCAAGTGTCA
GCTTTCTTTGGTGAATTTGCTCATCTGTTTTATTCAAGTGTCGAGCAGCC
TGTACCCCTAGAAACACGGTGACTTTATTTTTATTAAGTTCCAAGCAGGA
AGGAAGCCAGGAGGCAGGAGAGGCGAAGGAGGGGAGCAAGATCTGGGCTT
GGCTTCCCTCAGAGTAGCCGCGCAGGTCCGCCTTCAGCGTGCTCTGTGGA
CCTGCCTCGGTTTTTATCCAGCCATTGTTCATTTCTCCACTGCGTTTGCA
CACTGTGGCGCGTCTGGGGAATTTCAGCAGTTGGAATATACATGAAAAGA
GTTCCGCTCCACTTTCATAAGGTCCCTGGACGGCTCGGACGAGGCCTCAA
GGCCCCATGGTGAAGCCGGCAACCCATTCGTATTCCTTCCATCACCACAC
ACACGGTAGCACGAAGCCCAGACCAATCGAAAACTTGACAGTAAGCCTTT
TGATTTTGCGGGGAAACT

NAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGGATGAGAATAGTCCAAGT
GCCTGCTTACCCCTGCCCACTCCATCACAGTGACAGTGGAGTGCTAACTG
ACCCAAGGAACACCAGACTTCACCCAGTGGGAGTGATAATAGGAGTCTGA
TTCTTGTTTGTTTTATTGGTTGGTTTGCTTGGGGTTTTGTTGGAAATTAG
AATGGGAAAAATGCAAGTCTTAAGAATTTGAGCTGGACCATCCTGTGAAG
AAGGTGCTGCAGGACGCAATACACTGAGAAGCAGGCAGCCAGAGTCAAAG
GAAAGAGGACAAGCAAGGGGCAGACTGGGAGGGTTGGCCCTATAGATTTC
TGGCTCCAACCCCAGATCACCCCCCCCGACGTTTGGATCCTGGCATCCTC
AGTACCTATCTAGTGCTGGTTCTTGGGCCACTTAGCGCCTTCATTTACAG
TTGAGGAACTTCCTCTTCCTAACCCCCCAGGAGCAACCTAGCCTCTCCTT
ACAGTCTCACTTAAACTAGTCAGAGTGAGCCTCTGAGCTCTTCCATTCAA
AAAGCTTTGATTGGCACATTTCTTGACACAGTGGCCCAGCCCATTCACAG
ACTCTCCTGTCTTCTTTTGCTTCATGTCTCATTTGGATAATTCCATCACT
CATTTTGTTCCTAGATTTCTTACTAACTTTTTGTTATTTCAAATGATTGC
TGCAGGATATTTGATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_p18.b1 MSMg01no515_p18.b1 CHROMAT_FILE:
MSMg01no515_p18.b1 PHD_FILE: MSMg01no515_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:32 2005
         (669 letters)



>mm_chr8_90243014_90244082
          Length = 1069

 Score = 1255 bits (649), Expect = 0.0
 Identities = 661/665 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcggtgtgaggaggaaggaggagctggctcaaggacatcagtgttttctacacaca 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gaattcggtgtgaggaggaaggaggagctggctcaaggacatcagtgttttctacacaca 977

                                                                        
Query: 65   ctcaggcatacacacacatgcatgcacacacgggcacatgctgcacataagccctttgca 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ctcaggcatacacacacatgcatgcacacacgggcacatgctgcacataagccctttgca 917

                                                                        
Query: 125  ttcatgtgcacacacaagcgtacatacatctgcacctaaacatatacctaagctatagtt 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  ttcatgtgcacacacaagcgtacatacatctgcacctaaacatatacctaagctatagtt 857

                                                                        
Query: 185  tacgaaagagaaataagaaaacaaacgctttgccctgaatgtcacccgtgtattttcccc 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  tacgaaagagaaataagaaaacaaacgctttgccctgaatgtcacccgtgtattttcccc 797

                                                                        
Query: 245  aagtgtcagctttctttggtgaatttgctcatctgttttattcaagtgtcgagcagcctg 304
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  aagtgtcagctttttttggtgaatttgctcatctgttttattcaagtgtcgagcagcctg 737

                                                                        
Query: 305  tacccctagaaacacggtgactttatttttattaagttccaagcaggaaggaagccagga 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  tacccctagaaacacggtgactttatttttattaagttccaagcaggaaggaagccagga 677

                                                                        
Query: 365  ggcaggagaggcgaaggaggggagcaagatctgggcttggcttccctcagagtagccgcg 424
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 676  ggcaggagaggcgaaggaggggagcaagatccgggcttggcttccctcagagtagccgcg 617

                                                                        
Query: 425  caggtccgccttcagcgtgctctgtggacctgcctcggtttttatccagccattgttcat 484
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  caggtctgccttcagcgtgctctgtggacctgcctcggtttttatccagccattgttcat 557

                                                                        
Query: 485  ttctccactgcgtttgcacactgtggcgcgtctggggaatttcagcagttggaatataca 544
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  ttctccacggcgtttgcacactgtggcgcgtctggggaatttcagcagttggaatataca 497

                                                                        
Query: 545  tgaaaagagttccgctccactttcataaggtccctggacggctcggacgaggcctcaagg 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  tgaaaagagttccgctccactttcataaggtccctggacggctcggacgaggcctcaagg 437

                                                                        
Query: 605  ccccatggtgaagccggcaacccattcgtattccttccatcaccacacacacggtagcac 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  ccccatggtgaagccggcaacccattcgtattccttccatcaccacacacacggtagcac 377

                 
Query: 665  gaagc 669
            |||||
Sbjct: 376  gaagc 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no515_p18.g1 MSMg01no515_p18.g1 CHROMAT_FILE:
MSMg01no515_p18.g1 PHD_FILE: MSMg01no515_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:32 2005
         (344 letters)



>mm_chr8_90076868_90077611
          Length = 744

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaggatgagaatagtccaagtgcctgcttacccctgcccactccatcacagtgacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaggatgagaatagtccaagtgcctgcttacccctgcccactccatcacagtgacagt 260

                                                                       
Query: 61  ggagtgctaactgacccaaggaacaccagacttcacccagtgggagtgataataggagtc 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtgctaagtgacccaaggaacaccagacttcacccagtgggagtgataataggagtc 320

                                                                       
Query: 121 tgattcttgtttgttttattggttggtttgcttggggttttgttggaaattagaatggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattcttgtttgttttattggttggtttgcttggggttttgttggaaattagaatggga 380

                                                                       
Query: 181 aaaatgcaagtcttaagaatttgagctggaccatcctgtgaagaaggtgctgcaggacgc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 381 aaaatgcaagtcttaagaatttgagctggaccatcctgtgaagaaagtgctgcaggatgc 440

                                                                       
Query: 241 aatacactgagaagcaggcagccagagtcaaaggaaagaggacaagcaaggggcagactg 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 aatacactgagaagcaggcagccagaatcaaaggaaagaggacaagcaaggggcagactg 500

                                                    
Query: 301 ggagggttggccctatagatttctggctccaaccccagatc 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagggttggccctatagatttctggctccaaccccagatc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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