BAC Information

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BAC

Clone NameMSMg01-516A07
Chromosome8 (Build37)
Map Location 30,354,492 - 30,354,959
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666446, LOC100042598, Unc5d
Downstream geneLOC100041237, EG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516A07.T7 (MSMg01no516_a07.b1)MSMg01-516A07.TJ (MSMg01no516_a07.g1)
ACCAG588116AG588117
length759769
length of high quality
(start - end)		695 (50 - 744)582 (80 - 661)
definitionCHROMAT_FILE: MSMg01no516_a07.b1 PHD_FILE: MSMg01no516_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:35 2005CHROMAT_FILE: MSMg01no516_a07.g1 PHD_FILE: MSMg01no516_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCACAATCCCTTGCCTTAGTCTCCCATGTCCAAGGAGTAC
AAGCATAGGCCACCACACCTGGCTGTCATTGACTTCATTGATGTTTGGTG
AAAGCAAGAGTGATTAATTTTTAAGCAAATGATGATTACATTCTATTTTT
GTTTGTCGTTTTGAAGTTGAATACTATGTAAAATGATGTTGAATTGAAAT
CTATTTTACTAATGGATAGACGTTTTATTGTTTTAAAAAACATTTTAAAA
AAATGCTTTGACAATTTCATGCAATGCATTTTACCATATTTACCTCCCTC
ACCTCCCTAAGTTCTTCCTAGATCAATCCCTACCTCTTCAACTCCAAATT
CTATCAATTTTGCTCTTTTCTTTATAATCCACTTCTTCAATTTTGTCTTG
CCCAAATGTTCCTGGATGTAAAACCATTGACTGGAGCATTGTCAATCTTC
TAGGAGCCACACCCTTAAAGAAAACTGACTTCTCTTTCCCAGAAGCCGTT
AACTGTCCATAGATCCTAGGTTGGTAGTGGAGGCTCATGAAACTCTTTTT
CTCCACACATGATCTTGTGTGAGTGTTCTATGGGCAACACCAGCAACTGT
GAGTTCATGAGTCCAGCAGTCAGTTCTGTAGTTTTCAGAAGACATTGTTT
CACCCTGGCCCTCCATGACCTCTGACTCTCATAAACTTTTTTGATCCCTC
TTCTACACG

NNNCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCATAATGAAACCTAGA
AAGTAGCACGAGTTAAAGAAGTTAAAAGGGACTGGGTGGTAGTGGTGGAT
CCACTTAGGAGGTGGGGGTAGGTAGGATAGCTAAGCTCAAGGCCAATCTG
GATGACAGAATGAATTCCAGGACAACCAGGCCTATACAGAGAAGCTCTTT
CTTGAAAAACAAAACAAAACAAACAAAAAAACCAAAAAAATCAAAAATCA
AAACAAGAAAAAGAAAAAGGAGGAGGACCAGGAAGAAGAGGAGGAGGAGG
AGTTGGAGGAGGCGAAGAAGAAGAAGAAGCAACAGCAGCAGCAGCAGTAG
CAGCAGTAGTTGTGTAGTAGTTGTTAAAAGGGTAGGAGAGATGGAGAAAT
GGGAACAGGCAACTGCTACAAAGCCGGAAAATCCAAGTTTGATCTCTATA
GAGAAGAAATTCCTACATGTTTTCCTCTGATATCTGTAAGTTTGCCATGG
CATATATGAATGCATATGCACACATATACACATGCATGTACACTCACATG
CATGCACACATAAACACATGCACACACACACACACACACACACACACACC
AAATAAACTTAANTTGTAAAGAGGGGAGGGGAGACTTATGCAGCCAGACA
GTGTGTAATGAACTAATACTTGAAGAAAAATGAAAATAATCTAAGTATAT
TATGGAAATAAAGTTAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_a07.b1 MSMg01no516_a07.b1 CHROMAT_FILE:
MSMg01no516_a07.b1 PHD_FILE: MSMg01no516_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:35 2005
         (695 letters)



>mm_chr8_30354492_30355585
          Length = 1094

 Score =  837 bits (433), Expect = 0.0
 Identities = 460/471 (97%), Gaps = 5/471 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcacaatcccttgccttagtctcccatgtccaaggagtacaagcataggccaccac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaattcacaatcccttgccttagtctcccatgtccaaggagtacaagcataggccaccac 409

                                                                       
Query: 68  acctggctgtcattgacttcattgatgtttggtgaaagcaagagtgattaatttttaagc 127
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 408 acctggctgtcattgacttcattgatgtttagtgaaagcaacagtgattaatttttaagc 349

                                                                       
Query: 128 aaatgatgattacattctatttttgtttgtcgttttgaagttgaatactatgtaaaatga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaatgatgattacattctatttttgtttgtcgttttgaagttgaatactatgtaaaatga 289

                                                                       
Query: 188 tgttgaattgaaatctattttactaatggatagacgttttattgttttaaaaaacatttt 247
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 288 tgttgaattgaaatctattttactaatggatagacattttattgttttaaaaaacatttt 229

                                                                       
Query: 248 aaaaaaa--tgctttgacaatttcatgcaatgcattttaccatatttacctccctcacct 305
              ||||  | ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 228 ---aaaattttctttgacaatttcatgcaatgtattttaccatatttacctccctcacct 172

                                                                       
Query: 306 ccctaagttcttcctagatcaatccctacctcttcaactccaaattctatcaattttgct 365
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 171 ccctaagttcttcctagatcaatccctacctcttcaactccaaattctatcagttttgct 112

                                                                       
Query: 366 cttttctttataatccacttcttcaattttgtcttgcccaaatgttcctggatgtaaaac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cttttctttataatccacttcttcaattttgtcttgcccaaatgttcctggatgtaaaac 52

                                                              
Query: 426 cattgactggagcattgtcaatcttctaggagccacacccttaaagaaaac 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  cattgactggagcattgtcaatcttctaggagccacacccttaaagaaaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1094
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1084
Effective search space:   742540
Effective search space used:   742540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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