Query= MSMg01no516_h20.b1 MSMg01no516_h20.b1 CHROMAT_FILE:
MSMg01no516_h20.b1 PHD_FILE: MSMg01no516_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(599 letters)
>mm_chr8_130657025_130658023
Length = 999
Score = 1112 bits (575), Expect = 0.0
Identities = 590/595 (99%)
Strand = Plus / Minus
Query: 5 gaattccaagggcatctaaggaaacatccaggtctttgtgtcacaggacaaagaactgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gaattccaagggcatctaaggaaacatccaggtctttgtgtcacaggacaaagaactgta 740
Query: 65 ccagagatacacagctaaaaataaatacagagacatattattgccctagaacccataggg 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 739 ccagagatacacagctaaaaataaatacagagacatattattaccctagaacccataggg 680
Query: 125 gctcctgaacttggaaaggtgtatactccagtgcattggccaagtcccatgagcctttgt 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gctcctgaacttggataggtgtatactccagtgcattggccaagtcccatgagcctttgt 620
Query: 185 agatacatacagatcaccatctctcttatgtgtactccttcagctttgcttgggggatgt 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 619 agatacatacagatcaccatctctcttatgtgtactccttcagctctgcttgggggatgt 560
Query: 245 tctatttgttagacatagcccaggtgaggagaggtctatattcatgctttgtcacctagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctatttgttagacatagcccaggtgaggagaggtctatattcatgctttgtcacctagc 500
Query: 305 tttcagttgttatttttgatgccactctctactctcctgctgcagcagcaccttcatatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttcagttgttatttttgatgccactctctactctcctgctgcagcagcaccttcatatc 440
Query: 365 aatgtcaatggtgaccgtgatggtgcaggctccattttcattttgatgacttatgtcttt 424
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 439 aatgtcaatggtgaccgtgatggtgtgggctccattttcattttgatgacttatgtcttt 380
Query: 425 tcccctttagtctgacatggaactctgtagatggcacaatttcatttaagtgaaaaatct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcccctttagtctgacatggaactctgtagatggcacaatttcatttaagtgaaaaatct 320
Query: 485 agtacactccaaagtgttctcctccttctgggaggagcccagtcaatataattctctctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtacactccaaagtgttctcctccttctgggaggagcccagtcaatataattctctctg 260
Query: 545 tatgggattgatagatgggtgacccctaactggccttgacaaccaaagaagagaa 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tatgggattgatagatgggtgacccctaactggccttgacaaccaaagaagagaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_h20.g1 MSMg01no516_h20.g1 CHROMAT_FILE:
MSMg01no516_h20.g1 PHD_FILE: MSMg01no516_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:14 2005
(626 letters)
>mm_chr8_130482194_130483219
Length = 1026
Score = 1125 bits (582), Expect = 0.0
Identities = 614/634 (96%), Gaps = 16/634 (2%)
Strand = Plus / Plus
Query: 1 tccaggtggttctctctcattatggagggcacagtcatatggcacagccctcactacaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tccaggtggttctctctcattatggagggcacagtcatatggcacaaccctcactacaaa 260
Query: 61 cccaggggatgacaccctgtcattaggcgtgtcccagagagcaacatcgatgggatgggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaggggatgacaccctgtcattaggcgtgtcccagagagcaacatcgatgggatgggc 320
Query: 121 ccccctctccagagctataggctgga--------gacttcaaacaggaatattgtttgaa 172
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ccccctctccagagctataggctggaaggatggagacttcaaacaggaatattgtttgaa 380
Query: 173 tcatcttgactcgagacttttttttaacgtctctcaatctttcagtgcggtggggggcgg 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcttgactcgagacttttttttaacgtctctcaatctttcagtgcggtgggggg--- 437
Query: 233 ggggggagcatgagaggggggaagaactagagggctgctaattcaaagctgaggactgtt 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 -----gagcatgagaggggggaagaactagagggctgctaattcaaagctgaggactgtt 492
Query: 293 gctgtgaattcaccgtgacaacaatgtggtcgacgtttgtttttcacacttcagttcaca 352
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 493 gctgtgaattcaccgtgacaacaatgtggtcgacgtctgtttttcacacttcaattcaca 552
Query: 353 cttatttcagggctggggaaaaaccatgtgcttgtaagaaattggaactcattcagagac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cttatttcagggctggggaaaaaccatgtgcttgtaagaaattggaactcattcagagac 612
Query: 413 tggaagcccacagcataaggaaggctctttcctggggagatatagagcatccttcctggc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tggaagcccacagcataaggaaggctctttcctggggagatatagagcatccttcctggc 672
Query: 473 ctaatttccccattgcttactggggacactctagcaaacaagggtggctgcaggttgatg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctaatttccccattgcttactggggacactctagcaaacaagggtggctgcaggttgatg 732
Query: 533 cagcctggcatttctttaggttagcttcccaataggcttccttcccacccactgaccacc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cagcctggcatttctttaggttagcttcccaataggcttccttcccacccactgaccacc 792
Query: 593 atgttacactcagaataagctactttatattcag 626
|||||||||||||||||| |||||||||||||||
Sbjct: 793 atgttacactcagaataaactactttatattcag 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
