BAC Information

Click to search

BAC

Clone NameMSMg01-517G16
Chromosome8 (Build37)
Map Location 23,520,228 - 23,673,141
singlet/doubletdoublet
Overlap geneMrps31, AI316807, Slc20a2
Upstream geneLOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006
Downstream geneLOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517G16.T7 (MSMg01no517_g16.b1)MSMg01-517G16.TJ (MSMg01no517_g16.g1)
ACCAG589173AG589174
length750755
length of high quality
(start - end)		649 (37 - 685)593 (68 - 660)
definitionCHROMAT_FILE: MSMg01no517_g16.b1 PHD_FILE: MSMg01no517_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:29 2005CHROMAT_FILE: MSMg01no517_g16.g1 PHD_FILE: MSMg01no517_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(23,672,489 - 23,673,141)(23,520,228 - 23,520,818)
sequence
TGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGC
CCCACCCCAAAGAAGTTAATATACAATATTTCCTCTCAGTGATACGCCTG
TCCTATTTCTGTGCTCAGCACACTCCTCTATTCATCTCTCTAGGTCTGGA
AACTTACATGCCGATGTCTAACAGGTACTCAATCTTTTGTTTGATGTTTG
GAAACATCTTTGAAATCAACTATTTAAAACCGCGCAAAGACTTAAGAGGC
ACGAGCGCTGCCAGGTCACTGCTAAATGTCACAAGGAGCTGGGCTGGGAA
GTCCTCCTGACTACCCGGCTTGACACGTCTTCCTGATGTTTCCCATCTCT
CCCCGGGAAGCTACAGGGCTCAGGGTGTGCACTCTGCTTCCATCCTTCCC
TTCCCTCACTCCCGGGATCTCTACCCAGCACCACTGGCTTTGGGGCATAG
GCCCTCGTCTGCACCCAGCCTGATTGTCCTGACCTCAGACACACTCAGTG
GGCTGCTAACTGGGCTGTCACTTGGGTGTGACAGGTTGATGGTTTACCCC
TGAACCAGCCCTTTCTGGGTTGTACTTGCTGGTGTGACAACTCATCCTTG
GATTTGCCAGAGCCAAAATTGTTGGAGCAGGCTTCCTTCTTTCAGACCTG
TCTAATTCAGAGGTTCTCAACCTGTGGGTCTTTCCCAGGGTCACCTGAGA
CCATCTACAAATCAGATAATTTACATTTGAAACAATAGCAAAAATGAAGN


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCACACCACTAAGCCCCTTACCCCATAAAAACCC
CTAGCTTCCAAGCCTCGTGGCCGACATCCGTTATCTCCTGTGTAGGATGC
ATGTTGGTCTGGAGCTCCGTCATTAAACTACCTCATGTAACTACATCAGG
GTGGTCTATTCATGATTCTTTGGGTGCACGCCGAATCTGGAATTGAGTGG
GGGTTTCCCCACTAGGTTCTATCAGTGTCAACACTAAGACATGTAGAAGA
TAGCTTTGATGCATCTTTATGTTGGAGGAAAAATGGCATAAAATAAGTTT
TAATTTAATGTTTCTGATATTGGAGGAATATACTTGGAGTTATAAACTAC
TGTGTGTTGTTGTTCCTGTTCTTACAAAGATATATTTGGCCAGTACAGAG
AAATGCAATATATTTGATTATAAATGCCTTCTGCCTTGTAATTAATATAG
TATATTATATATTAGATCTACCCTCAGTGATAAATGTATTTTGAAGCTTG
AAAAGAGTTGTAATAAAGTTGTCTGTACCGTTGCAAAAAAAAAAAAAAAA
TCCCTGAGAAAATAACACTAGCTGGCCTGAATTCAATGGGTCCATGCAGG
CACTCAGTTTCCATTCAGAGATTCATCCGGTGAACCGGATCTGTCTTGGA
TCCCCATATCGTGGCGCTATAATTGTCCATGTTAAAACAAACAAACAAAG
CCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_g16.b1 MSMg01no517_g16.b1 CHROMAT_FILE:
MSMg01no517_g16.b1 PHD_FILE: MSMg01no517_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:29 2005
         (649 letters)



>mm_chr8_23672436_23673485
          Length = 1050

 Score = 1201 bits (621), Expect = 0.0
 Identities = 642/653 (98%), Gaps = 8/653 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagccccaccccaaagaagtt-aatatacaatatttcctctcagtgatacgcct 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 706 gaattcaagccccaccccaaagaagttaaatatacaatatttcctctcagtgatacgcct 647

                                                                       
Query: 64  gtcctatttctgtgctcagcacactcctctattcatctctctaggtctggaaacttacat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtcctatttctgtgctcagcacactcctctattcatctctctaggtctggaaacttacat 587

                                                                       
Query: 124 gccgatgtctaacaggtactcaatcttttgtttgatgtttggaaacatctttgaaatcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gccgatgtctaacaggtactcaatcttttgtttgatgtttggaaacatctttgaaatcaa 527

                                                                       
Query: 184 ctatttaaaaccgcgcaaagacttaagaggcacgagcgctgccaggtcactgctaaatgt 243
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 526 ctatttaaaaccgcgcaaagacttaagaggcatgagcgctgccaggtcactgctaaatgt 467

                                                                       
Query: 244 cacaaggagctgggctgggaagtcctcctgactacccggcttgacacgtcttcctgatgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cacaaggagctgggctgggaagtcctcctgactacccggcttgacacgtcttcctgatgt 407

                                                                       
Query: 304 ttcccatctctccccgggaagctacagggctcagggtgtgcactctgcttccatccttcc 363
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttcccatctctccctgggaagctacagggctcagggtgtgcactctgcttccatccttcc 347

                                                                       
Query: 364 cttccctcactcccgggatctctacccagcaccactggctttggggcataggccctcgtc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cttccctcactcccgggatctctacccagcaccactggctttggggcataggccctcgtc 287

                                                                       
Query: 424 tgcacccagcctgattgtcctgacctcagacacactcagtgggctgctaactgggctgtc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tgcacccagcctgattgtcctgacctcagacacactcagtgggctgctaactgggctgtc 227

                                                                       
Query: 484 acttgggtgtgacaggttgatg-------gtttacccctgaaccagccctttctgggttg 536
           ||||||||||||||||||||||       |||||||||||||||||||||||||||||||
Sbjct: 226 acttgggtgtgacaggttgatgtctaactgtttacccctgaaccagccctttctgggttg 167

                                                                       
Query: 537 tacttgctggtgtgacaactcatccttggatttgccagagccaaaattgttggagcaggc 596
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 166 tacttgctggtgtgacaactcatccttggatttgcccgagccaaaattgttggagcaggc 107

                                                                
Query: 597 ttccttctttcagacctgtctaattcagaggttctcaacctgtgggtctttcc 649
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ttccttctttcagacctgtctaattcagaggttctcaacctgtgggtctttcc 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1050
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1040
Effective search space:   664560
Effective search space used:   664560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no517_g16.g1 MSMg01no517_g16.g1 CHROMAT_FILE:
MSMg01no517_g16.g1 PHD_FILE: MSMg01no517_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:30 2005
         (593 letters)



>mm_chr8_23520028_23521018
          Length = 991

 Score = 1009 bits (522), Expect = 0.0
 Identities = 576/594 (96%), Gaps = 4/594 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaccactaagccccttaccccataaaaacccctagcttcc-aagcctcgtggccgaca 59
           |||||| ||||||||||||||||||||||||||||||||||  || |||| |||||||||
Sbjct: 201 cacacccctaagccccttaccccataaaaacccctagcttctgaa-cctcatggccgaca 259

                                                                       
Query: 60  tccgttatctcctgtgtaggatgcatgttggtctggagctccgtcattaaactacctcat 119
           ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 tccattatctcctgtgtaggctgcatgttggtccggagctccgtcattaaactacctcat 319

                                                                       
Query: 120 gtaactacatcagggtggtctattcatgattctttgggtgcacgccgaatctggaattga 179
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 320 gtaactacatcagggtggtctattcatgattctttgggtgcccgctgaatctggaattga 379

                                                                       
Query: 180 gtgggggtttccccactaggttctatcagtgtcaacactaagacatgtagaagatagctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtgggggtttccccactaggttctatcagtgtcaacactaagacatgtagaagatagctt 439

                                                                       
Query: 240 tgatgcatctttatgttggaggaaaaatggcataaaataagttttaatttaatgtttctg 299
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 tgatgcatctttatgttggaggaaaa-tggcataaaataagttttaatttaatgtttctg 498

                                                                       
Query: 300 atattggaggaatatacttggagttataaactactgtgtgttgttgttcctgttcttaca 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 499 atattggaggaatatacttggagttataaactactgtgtgttgttgctcctgttcttaca 558

                                                                       
Query: 360 aagatatatttggccagtacagagaaatgcaatatatttgattataaatgccttctgcct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagatatatttggccagtacagagaaatgcaatatatttgattataaatgccttctgcct 618

                                                                       
Query: 420 tgtaattaatatagtatattatatattagatctaccctcagtgataaatgtattttgaag 479
           |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 619 tgtaattaatatagtatattatatattagatctaacctcagtgataaatgcattttgaag 678

                                                                       
Query: 480 cttgaaaagagttgtaataaagttgtctgtaccgttgcaaaaaaaaaaaaaaaatccctg 539
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 679 cttgaaaagagttgtaataaaattgtctgtaccgttgcaaaaaaaaaaaaaaa-tccctg 737

                                                                 
Query: 540 agaaaataacactagctggcctgaattcaatgggtccatgcaggcactcagttt 593
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 738 agaaaataacactagctggtctgaattcaatgggtccatgcaggtactcagttt 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space:   571923
Effective search space used:   571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |