BAC Information

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BAC

Clone NameMSMg01-517L13
Chromosome8 (Build37)
Map Location 69,211,284 - 69,211,909
singlet/doubletsinglet
Overlap geneNpy5r
Upstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2
Downstream geneNpy1r, BC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517L13.T7 (MSMg01no517_l13.b1)MSMg01-517L13.TJ (MSMg01no517_l13.g1)
ACCAG589402AG589403
length754748
length of high quality
(start - end)
639 (37 - 675)628 (65 - 692)
definitionCHROMAT_FILE: MSMg01no517_l13.b1 PHD_FILE: MSMg01no517_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:54 2005CHROMAT_FILE: MSMg01no517_l13.g1 PHD_FILE: MSMg01no517_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAA
GAAGTAGGTTATAACAGCAGCACAGGGATCCCTCAGCAACAGGCATGAAC
ATTCCATTGAGAGCAAAGATAAGCAGGCAATAAGCAAAGGTTTCTTTCTA
TGTGGGCTGCAACAGAGAAGGTGTTGCCCCAATTTAGAGTGGGTCATTCC
AACTCAAATAGTCCGATCAAGAAAATCCCTCACACTGTGTCAAGCTGCTT
GTATTTTGTTTGATTCCAAATGTAGTAAAGCTGAAAACTAAGGTTACCCA
TCATAACTGGATGCTTATGTCAATACCTGGTGACATAATACCCCACAGGT
TTCTGAGGCTGTTTATGTTCTTCATTCTTGTCAATGTTTCCTTCAGATTA
AATCATCTCAATTGACACAGTCTTATTTAGTAATTTCTTATAACTTTTAC
ATGTACAAAACTATGTTATATATCACAGAAGAAGAGCATGGAAGTGAAAC
TTTATTATTATTATTATTATTATTATTATATTACTACTGTTGTTATCATT
ATTATTGCTATCATTATTATTAATACTAAAGCCTTTGTTGATAAGTTATT
TCCCCACTGGTGGAATAAGCCGTTCAAGTCATATTAAATTATCTATTAAA
ACAGGTTTATTGGGAAGCTGCTCTCAGACAGGAGAGTTCACTGGCCCCAA
GGAAGTTGGCCAGGGAAGTTGCCATGGGGAAAGAGAGAGGGAANNGGGGA
GAAN
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTTTTACCCCCTTGGAACTCAGGTGTGTGGATGGC
TATTTCCTGCTCGCAGTTGACTTACAAGCCACCTTGCAAACCCAAGTGCA
CAGCTGTCTCCCTGTGTGTGGCCAGCTGTGGGACAAGAAGGCAGCTGAAT
CGCCTCATCCTGGACATAGCCAGAGCTCAGCTAGGGCTGACAACCTGAGT
GGGCACCCCGTGGGTTGTGGTTCCCTTACCTCAGACGCCCACCGAGCTGT
ACCCCGGGTTCCCCTAAGCCAAAGCAGGGACTGAGCTTCGTCCATCCCTC
CTTCCCATACTAGGGACCCTCCCGGGACAATCCGATAGGGTCTGGCAAGA
ACCTGCTCCTCTGTGAGTTTGGCACCGGAGGGAACTGCCAGACTAGGGAG
GATTCAACTGCAACCGTTTCCCCCCCGCTCTCCCTTCCCGCCGCCTGACA
ACTGCGGTTTCTCCACCTCCATCCCCTTTCTCAATCAGGCTGCCTCCCGG
TCCGCAACCCACCCTCTTGGAAACCACAAGATGCTCCAGAACCCAGGATA
GGGACGTGGGCTTCTCGTAGGGGCAGGCGAGGCCTGGAGTGGGTACCTCG
GGATGCCCTGGCCGCTGCGGGTGCCTGGACTCCGGGGTACGCGGCTGAGT
GCGGTCGCTTCTGCTTGAGATGGAAGCGGTGGCAGCAGGAGCAGGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_l13.g1 MSMg01no517_l13.g1 CHROMAT_FILE:
MSMg01no517_l13.g1 PHD_FILE: MSMg01no517_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:54 2005
         (628 letters)



>mm_chr8_69211084_69212109
          Length = 1026

 Score = 1133 bits (586), Expect = 0.0
 Identities = 617/628 (98%), Gaps = 2/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttttacccccttggaactcaggtgtgtggatggctatttcctgctcgcagttgactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctttttacccccttggaactcaggtgtgtggatggctatttcctgctagcagttgactta 260

                                                                       
Query: 61  caagccaccttgcaaacccaagtgcacagctgtctccctgtgtgtggccagctgtgggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagccaccttgcaaacccaagtgcacagctgtctccctgtgtgtggccagctgtgggac 320

                                                                       
Query: 121 aagaaggcagctgaatcgcctcatcctggacatagccagagctcagctagggctgacaac 180
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaaggcagctgaatcgccgcatcctggacatagccagagctcagctagggctgacaac 380

                                                                       
Query: 181 ctgagtgggcaccccgtgggttgtggttcccttacctcagacgcccaccgagctgtaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagtgggcaccccgtgggttgtggttcccttacctcagacgcccaccgagctgtaccc 440

                                                                       
Query: 241 cgggttcccctaagccaaagcagggactgagcttcgtccatccctccttcccatactagg 300
           || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgcgttcccctaagccaaagcggggactgagcttcgtccatccctccttcccatactagg 500

                                                                       
Query: 301 gaccctcccgggacaatccgatagggtctggcaagaacctgctcctctgtgagtttggca 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccctcccgggacaatctgatagggtctggcaagaacctgctcctctgtgagtttggca 560

                                                                       
Query: 361 ccggagggaactgccagactagggaggattcaactgcaaccgtttcccccccgctctccc 420
           || |||||| ||||||||||||| ||||||||||||||||||||||||||  ||||||||
Sbjct: 561 ccagagggacctgccagactaggaaggattcaactgcaaccgtttccccc--gctctccc 618

                                                                       
Query: 421 ttcccgccgcctgacaactgcggtttctccacctccatcccctttctcaatcaggctgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttcccgccgcctgacaactgcggtttctccacctccatcccctttctcaatcaggctgcc 678

                                                                       
Query: 481 tcccggtccgcaacccaccctcttggaaaccacaagatgctccagaacccaggataggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcccggtccgcaacccaccctcttggaaaccacaagatgctccagaacccaggataggga 738

                                                                       
Query: 541 cgtgggcttctcgtaggggcaggcgaggcctggagtgggtacctcgggatgccctggccg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cgtgggcttctcgtaggggcaggcgaggcctggagtgggtacctcgggatgccctggccg 798

                                       
Query: 601 ctgcgggtgcctggactccggggtacgc 628
           ||||||||||||||||||||||||||||
Sbjct: 799 ctgcgggtgcctggactccggggtacgc 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1026
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1016
Effective search space:   627888
Effective search space used:   627888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)