Query= MSMg01no517_o08.b1 MSMg01no517_o08.b1 CHROMAT_FILE:
MSMg01no517_o08.b1 PHD_FILE: MSMg01no517_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:08 2005
(696 letters)
>mm_chr8_8506526_8507621
Length = 1096
Score = 1255 bits (649), Expect = 0.0
Identities = 682/693 (98%), Gaps = 2/693 (0%)
Strand = Plus / Minus
Query: 4 ggaattctatgtctaatgatgaggcagttccttgtgatttctgaaatagagagaggtaca 63
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 895 ggaattctatgtcaaatgatgaggcagttccttgtgatttctggaatagagagaggtaca 836
Query: 64 tttcttcttgaggcagcacacaagaagacagg-tgcctctgttgactttgtgtattgatg 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 835 tttcttcttgaggcagcacacaagaagacaggttgcctctgttgactttgtgtattgatg 776
Query: 123 ttgtggtctaatgggaatatcagcttaaattgcagaaacatctactccttcatctacttt 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 775 ttgtggtctaatgggaatatcagcttaaattgcagaaacatctactccttcatctactgt 716
Query: 183 ggagacctggaaccaagccagagtcaagttcaaggccttgagagatgctggaggcctatg 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 715 ggagacctggaaccaagccagagtcaagttcaaggccctgagagatgctggaggcctatg 656
Query: 243 tggtacaaataatattcaagtcatcacttcctactacaacaacaacaaaaaaaggagcta 302
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 655 tggtacaaataatattcaagccatcacttcctactacaacaacaac-aaaaaaggagcta 597
Query: 303 agaaaggcagtgttaaccagttcatcaactgaattagcttgttctgtcttccaggaaaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 agaaaggcagtgttaaccagttcatcaactgaattagcttgttctgtcttccaggaaaca 537
Query: 363 atggctcctgtcagggaagagaagtgttcatagcaagctagcagaagcctcaaaaacgga 422
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 536 atggctcctgttagggaagagaaatgttcatagcaagctagcagaagcctcaaaaacgga 477
Query: 423 ggtttgtagttaattttcaaaagcttaatggagaaaggaaaatatcttaaacacaagtcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggtttgtagttaattttcaaaagcttaatggagaaaggaaaatatcttaaacacaagtcc 417
Query: 483 tttgaaccatcaaagactattgcttaggttcacccaaaattcaaactccacgttgaaaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttgaaccatcaaagactattgcttaggttcacccaaaattcaaactccacgttgaaaga 357
Query: 543 catcactaatgtcaaaacaccaaagagaggttaaaaataagcatcgagacacagtgggtg 602
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 356 catcactaatgtcaaaacaccaaagagaggttaaaaataaacatcgagacactgtgggtg 297
Query: 603 gtgatccatgtgtatgatacataatgatatgtatatttttaaaaagtctgcaataaaacg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtgatccatgtgtatgatacataatgatatgtatatttttaaaaagtctgcaataaaacg 237
Query: 663 ccatgactgaaaaatcaaaaatgatatgagcaa 695
|||||||||||||||||||||||||||||||||
Sbjct: 236 ccatgactgaaaaatcaaaaatgatatgagcaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no517_o08.g1 MSMg01no517_o08.g1 CHROMAT_FILE:
MSMg01no517_o08.g1 PHD_FILE: MSMg01no517_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:08 2005
(661 letters)
>mm_chr8_8310503_8311566
Length = 1064
Score = 1249 bits (646), Expect = 0.0
Identities = 659/664 (99%), Gaps = 3/664 (0%)
Strand = Plus / Plus
Query: 1 aatgaaaataaatctttgaaaaaa-tccatagtcttttttttt--cctcctctgtaaact 57
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 201 aatgaaaataaatctttgaaaaaaatccatagtctttttttttttcctcctctgtaaact 260
Query: 58 tattttagggaatcatgccgccatagctaggattagactgtcctccaaatgtccgtgaag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttagggaatcatgccgccatagctaggattagactgtcctccaaatgtccgtgaag 320
Query: 118 tcagagctgatgaacatatcttcttgcctcattttctctaaaaaggtattctggtctcaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagagctgatgaacatatcttcttgcctcattttctctaaaaaggtattctggtctcaa 380
Query: 178 taaaaggctggaacataaagtcctgccaaattgtgcctatcttaaaagtccggaacagct 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaggctggaacataaagtcctgccaaattgtgcctatcttaaaagtccggaacagct 440
Query: 238 atgtcctgagacggtctcagagaatgactctgaacctgggaattctcccctccctgctct 297
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 atgtcctgagacggtctcagagaatgactctgaacctgtgaattctcccctccctgctct 500
Query: 298 ccgtaatgacatcactgacaccgagaatcttcacaagctggggccactaaacactcctcg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgtaatgacatcactgacaccgagaatcttcacaagctggggccactaaacactcctcg 560
Query: 358 agaggaaagagaataacagggaacgtcatctccttttctaaaaacttcaaaagagatcta 417
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 agaggaaagagaataacagggaacgtcatctctttttctaaaaacttcaaaagagatcta 620
Query: 418 aaatagagcatctaaatcaagggaagacaggctgtttggcagcaaaatatagcacgttct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatagagcatctaaatcaagggaagacaggctgtttggcagcaaaatatagcacgttct 680
Query: 478 tcacctcttcaaacaccatgatagtagccatagaagctttgaagaacatttttaaaagcc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacctcttcaaacaccatgatagtagccatagaagctttgaagaacatttttaaaagcc 740
Query: 538 agatgacattctggtggaggggggacttcaagcaaactagaaactacatgtctaatcagt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatgacattctggtggaggggggacttcaagcaaactagaaactacatgtctaatcagt 800
Query: 598 atacataaagtgcagtgatacatttactctttaaaagccatttatcccattaaactataa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atacataaagtgcagtgatacatttactctttaaaagccatttatcccattaaactataa 860
Query: 658 ccca 661
||||
Sbjct: 861 ccca 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1064
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1054
Effective search space: 686154
Effective search space used: 686154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
