BAC Information

Click to search

BAC

Clone NameMSMg01-518C21
Chromosome8 (Build37)
Map Location 19,023,893 - 19,024,481
singlet/doubletsinglet
Overlap geneDefb38
Upstream geneLOC665638, LOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37
Downstream geneDefb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518C21.T7 (MSMg01no518_c21.b1)MSMg01-518C21.TJ (MSMg01no518_c21.g1)
ACCAG589749AG589750
length773772
length of high quality
(start - end)		588 (48 - 635)589 (80 - 668)
definitionCHROMAT_FILE: MSMg01no518_c21.b1 PHD_FILE: MSMg01no518_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:30 2005CHROMAT_FILE: MSMg01no518_c21.g1 PHD_FILE: MSMg01no518_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:30 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTACCCCCTTTATGTATTGTCTAATGGTTGGTGCACCAATCA
CGTGTCAATTCATGTATGTTTTCTGTCTCATTGTCTGAATGATTGTTTCG
TTGTCTGAATGACTGACTGTTTTATGTTTCATGTTAAAAAAAAAATGGTT
AAAACTTTACCTGCTGAATCACTCTCAGTTGCACAACCGAGGCTGAGAGG
CCCCTCACTTTAGCCAAAATTCAAGCACAGCAGGAAAGGTCCTGCTAAAA
AACTTGTCTTTAAAGAGAAGGAGTCTTCAACCTCTTAGTTCTAAGACAAA
TAAGCCAATAGTTGTTTTTCCTAAAAAATTCTCTGCAAGTTTGTGATTAT
TAAAGCAAATTACAAAGTGTTTTTTATCTTATAGTATAGCTATAAGAAGT
AAAATTCTTTGATCTAAATTTATAATTTATAAGATTCGTGTAGCCACTTC
ATTTGGTTTTTGACTGGTCTTAAAGGTATAAATATGATCTGCATATCTTG
GTCATAGAAAATTGGTTTTTAAGTTATTTGGGTATGATTAAAAAGATGTA
TCACTGGTTATAAAGTTAACTTAAAAGTAGTAACTCAGGGCCAGAGTCAT
TTTGAAACAAAAGCACCTGGCATAAACCAGCCCAGAGAACTAGTCCTCTA
AAGATACTTCTAAATTGAGATAGCATTTTATGTAACTCTTATCCTAAAAA
TAGACTTACAAAGATAAATTTTA

NCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTATTTAGTTCATGCTGGCT
TTGATTCATCCTCTTAGATGTTGGGATTAAAGGAAGAATCATGATCTCTA
GCTGTAGAAAATTCTCATCACTACAAACTGTTCAGTGGGACAGTGGTGCT
ATGGTAGTGGGAGGAAATGAAATGACACTCAGCTTTCCCACCCCAGAAAT
TTCTCAGAGAAGCACCATAGCCTAAGCCCCTCACATGCTCATACTAAACC
CATCTTCTTGAGTTCTGTCTCATAGCCTTTCTCTACATTTGGGGGTTCTG
TCTTCTCTTGTGTATGATTGTTGAAAGAGCAATGCCTTAAATCTAACCTT
GGCCTCTACAATGATCATCCATAGTCAGACCCTTCAGAGGTGACCATCTC
CAGATTTTTTTTTTTTTTGAGCTGTCAGATGCTGGCATGACTCTAAGAGG
ATGCTTCGTGTATTCTATGTTCCCTGGTGAAATACTTGCAGCTGATTGGC
ACTAGGATGAGCAATAGAAATCAAAAATTGAAAGCATATTGCTGTGTTTG
TTTTTTTTAAATGGCATCATTAATGTATGTATTGATATATATGTTTCCCC
TCTTTATTTTTGATTGATTTTAACTGTTGTTTTAAATTATCAGCTTGACA
GAGTCTAGAGTAACTTGGGAAAAAGGGCTCCATTATGCCTGTTGAGATTA
TTTTGATTTTGTAATCAGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_c21.g1 MSMg01no518_c21.g1 CHROMAT_FILE:
MSMg01no518_c21.g1 PHD_FILE: MSMg01no518_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:30 2005
         (589 letters)



>mm_chr8_19023693_19024681
          Length = 989

 Score = 1044 bits (540), Expect = 0.0
 Identities = 578/592 (97%), Gaps = 6/592 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatttagttcatgctggctttgattcatcctcttagatgttgggattaaaggaagaat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 attatttagttcatgctggctttgatttatcctcttagatgttgggattaaaggaagaat 260

                                                                       
Query: 61  catgatctctagctgtagaaaattctcatcactacaaactgttcagtgggacagtggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgatctctagctgtagaaaattctcatcactacaaactgttcagtgggacagtggtgc 320

                                                                       
Query: 121 tatggtagtgggaggaaatgaaatgacactcagctttcccaccccagaaatttctcagag 180
           |||||||||||||||||||| | ||||||||||||||||||||||||||||||||  |||
Sbjct: 321 tatggtagtgggaggaaatggagtgacactcagctttcccaccccagaaatttct--gag 378

                                                                       
Query: 181 aagcaccatagcctaagcccctcacatgctcatactaaacccatcttcttgagttctgtc 240
           |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 aagcaccagagcctaagcccctcacatgctcacactaaacccatcttcttgagttctgtc 438

                                                                       
Query: 241 tcatagcctttctctacattt-gggggttctgtcttctcttgtgtatgattgttgaaaga 299
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcatagcctttctctacattttgggggttctgtcttctcttgtgtatgattgttgaaaga 498

                                                                       
Query: 300 gcaatgccttaaatctaaccttggcctctacaatgatcatccatagtcagacccttcaga 359
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 499 gcaatgccttaaatctaaccttggcctctacaatgatcatccgtagtcagactcttcaga 558

                                                                       
Query: 360 ggtgaccatctccagatttttttttttttt--gagctgtcagatgctggcatgactctaa 417
            |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 559 agtgaccatctccagattttttttttttttttgagctgtcagatgctggcatgactctaa 618

                                                                       
Query: 418 gaggatgcttcgtgtattctatgttccctggtgaaatacttgcagctgattggcactagg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaggatgcttcgtgtattctatgttccctggtgaaatacttgcagctgattggcactagg 678

                                                                       
Query: 478 atgagcaatagaaatcaaaaattgaaagcatattgctgtgtttgttttttttaaatggca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 679 atgagcaatagaaatcaaaaattgaaagcatattgctgtgtttgttttttt-aaatggca 737

                                                               
Query: 538 tcattaatgtatgtattgatatatatgtttcccctctttatttttgattgat 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcattaatgtatgtattgatatatatgtttcccctctttatttttgattgat 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |