BAC Information

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BAC

Clone NameMSMg01-518N19
Chromosome8 (Build37)
Map Location 108,148,372 - 108,149,020
singlet/doubletsinglet
Overlap gene2310066E14Rik, LOC546100
Upstream geneRrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846
Downstream geneCtcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518N19.T7 (MSMg01no518_n19.b1)MSMg01-518N19.TJ (MSMg01no518_n19.g1)
ACCAG590270AG590271
length766789
length of high quality
(start - end)		647 (47 - 693)633 (76 - 708)
definitionCHROMAT_FILE: MSMg01no518_n19.b1 PHD_FILE: MSMg01no518_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:24 2005CHROMAT_FILE: MSMg01no518_n19.g1 PHD_FILE: MSMg01no518_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGGGGTTCCGATGGAAGCGGCTAGCTCTTTGGGAGGTGACTGA
GCAAGCCCTAGAGCAGTGGACAGTTGGACTGTAAGCTGTTTGTTTCTCTC
CAGAGAGTTGCTGACCATTGCTTGTAAAAATGAAGTTTGGGGTTGCAACT
TACTTGGCAGAGTGTTTACCTGGCGTGTAAAGTTTCGATCCCTGGCACTG
CAGAAGCCCACACATGGAGGATAGTTATGCGGCCTCTAATCCTTGCTTGC
TGGGAGGGAGCAAATCAGTCAGAAAGTTCGGGTTTTCTTGGCTCTTTGGT
GAGTTTTGAGGCAGTCTGAGCTATATGAGAGCTATGTGAGACACTGACTC
AAATTTTTATTTTAACTTTTTTGTTTGTTTGTTTGGGTTTTTTGTTTTGT
TTTTCGAGATGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTT
GTAGACCAGGCTGGCCTCAAACTCAGAAATCAGCCTGCCTCTGCCTCCCG
AGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCGGCTGTTTTGTTGTT
GTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTAACAAATCTTTCTTTCTT
TTTTTTTTTTTAAGATTTATTTATTTATTTATTATATGTAAGNACACTGT
AGCTGTCCTCAGATACTCCAGAAGAGGGCATCAGATTTTGTTACAGATGG
TTGTGAGCCACCATGT

CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAGCTGCATGACCAAAAAGAAGAA
AAAGCATGTTTATGCAGGCAAGGAAGCAGATGGGCTGGCACATGGGAAGA
GGACTGCTTCTTTGTCTCCCCCACAGAGCGGGGGTGCCTTCCTTGTACGA
TCCTGAGTCTGGTATGTGGGCACAACTTGCTGAGTACCAGCACATGAGAT
GTTCTCTGCTTTCTCTCCATCCCCTCAGAAAGCAGTGTACTATGCAGAAT
ACCCATCCCCAAGGCTCTTGGGGGACTGGAGAGGCAGCTCAGCAGTAAAG
AGCACTTACTGTTCTTGCAGAGGGACTGGGTTCAGTTCCCAATATCACAA
CTATCTCTAGGCACTTACATACATGCAGCCAAAATGCTCATACACACAAG
TCTAAGAAAGAAAAAAAGAAAGAGAGAGAGAGAGAGAGAAAGACAGACAG
ACAGACAGGCAGGCAGGCAGGCAGGCAGGCAGGCTGGCTCTGGGCATGGA
TGCTGGCTGGGCTGAGCTTTTCTGGATGTGGGTAATATGAGAAGGTGAGA
CTGGAAAGACTCCAGCTCCTCTTCTGAAAGTTAAGGAAGCACAATGTATC
ATTTAGAAAATCANGCAGTCAGTGGCCTGCAGTGACAGCCATAGTCTAAA
GTTGATGCTAACATTCAAGGACCAGCTGCCTCTGAACGTATGCTACATTC
CAGGCATATGGACATACGGTAAACACTGACTTTTATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_n19.g1 MSMg01no518_n19.g1 CHROMAT_FILE:
MSMg01no518_n19.g1 PHD_FILE: MSMg01no518_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:24 2005
         (633 letters)



>mm_chr8_108148188_108149220
          Length = 1033

 Score = 1152 bits (596), Expect = 0.0
 Identities = 628/649 (96%), Gaps = 16/649 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagctgcatgaccaaaaagaagaaaaagcatgtttatgcaggcaaggaagcagatgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaagctgcatgaccaaaaagaagaaaaagcatgtttatgcaggcaaggaagcagatgggc 244

                                                                       
Query: 61  tggcacatgggaagaggactgcttctttgtctcccccacagagcgggggtgccttccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggcacatgggaagaggactgcttctttgtctcccccacagagcgggggtgccttccttg 304

                                                                       
Query: 121 tacgatcctgagtctggtatgtgggcacaacttgctgagtaccagcacatgagatgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tacgatcctgagtctggtatgtgggcacaacttgctgagtaccagcacatgagatgttct 364

                                                                       
Query: 181 ctgctttctctccatcccctcagaaagcagtgtactatgcagaatacccatccccaaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 365 ctgctttctctccatcccctcagaaagcagtgtactatgcagaatgcccatccccaaggc 424

                                                                       
Query: 241 tcttgggggactggagaggcagctcagcagtaaagagcacttactgttcttgcagaggga 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcctgggggactggagaggcagctcagcagtaaagagcacttactgttcttgcagaggga 484

                                                                       
Query: 301 ctgggttcagttcccaatatcacaactatctctaggcacttacatacatgcagccaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctgggttcagttcccaatatcacaactatctctaggcacttacatacatgcagccaaaat 544

                                                                       
Query: 361 gctcatacacacaagtctaagaaagaaaaaaagaaagagagagagagagagaga------ 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 545 gctcatacacacaagtctaagaaagaaaaaaagaaagagagagagagagagagagagaga 604

                                                                       
Query: 415 ----------aagacagacagacagacaggcaggcaggcaggcaggcaggcaggctggct 464
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gagagagagaaagacagacagacagacaggcaggcaggcaggcaggcaggcaggctggct 664

                                                                       
Query: 465 ctgggcatggatgctggctgggctgagcttttctggatgtgggtaatatgagaaggtgag 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctgggcatggatgctggctgggctgagcttttctggatgtgggtaatatgagaaggtgag 724

                                                                       
Query: 525 actggaaagactccagctcctcttctgaaagttaaggaagcacaatgtatcatttagaaa 584
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 725 actggaaagactccacctcctcttctgaaagttaaggaagcacaaagtatcatttagaaa 784

                                                            
Query: 585 atcangcagtcagtggcctgcagtgacagccatagtctaaagttgatgc 633
           |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 atcaggcagtcagtggcctgcagtgacagccatagtctaaagttgatgc 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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