BAC Information

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BAC

Clone NameMSMg01-519A08
Chromosome8 (Build37)
Map Location 71,999,543 - 72,000,222
singlet/doubletsinglet
Overlap geneEG665578
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593
Downstream geneLOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519A08.T7 (MSMg01no519_a08.b1)MSMg01-519A08.TJ (MSMg01no519_a08.g1)
ACCAG590392AG590393
length724591
length of high quality
(start - end)		684 (41 - 724)37 (285 - 321)
definitionCHROMAT_FILE: MSMg01no519_a08.b1 PHD_FILE: MSMg01no519_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:37 2005CHROMAT_FILE: MSMg01no519_a08.g1 PHD_FILE: MSMg01no519_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGCCTTACGAGGTGAATAGGGCAGTGAGGTGCTCTGAAAACAAAAGGAA
CCTCTCTCTTCTGCACTACACTAACCCTTCCCCAATGAATGATCTTCCAC
AGTTGTCCATTAGATACCTGGGATATCAGAACAGTGGAGCTGAATTGTAA
AATGCATGAATCAAGTATGTCACTACCTACAGCAGAGGGGAATTGCTGAG
TTCCATGGATGGATTCTATATATGCCTTCCAAAATCTCACCTATTAGCTC
TATGTCAAAGTAACTTTTATGCACTAGGTGTAATTGTAATCTTTGATGCT
TACTACCTCCATCTGAGTGATAACCTAGACCTAGTCCTGGAAGCTTCTAG
CCTCTGTGAAACTTAGCATAGGCCTAGAATATTTTCTGCCTCTCATACTT
ACTGCTGAATAAGCACACCGCTATTTCTGGTTCTTTTTCATCTCTGGCTG
ACTGGTTCAACTCAGGTGTTCTAGCTCAAAGCTGCTCCCCATGCTAACTG
ATTCAGTCTGGATTCTCTCTTGGCCTCTGATGTTTTTTGTTCTGCTTGAC
CTCAAACTAACTAGCAATTTTTTTTCTAATCTTCTGACTCCTTCATATTC
TCTGGTTCATTCTGCCTTCACCCGTGTCTTGCTGGTTCTCTCTTCAATGA
ATCTCTCTAAAACTGTCTGGGTAA

TTTAAAGTTTGTGGGTATTTTTTTTTTAGATATAGATTTTCGGTGGTTGG
AAAGTAGAGATTAATAACAAATATTTGNCGGGCGTTTAAGGGNNCNNNNC
TCTNGTGTTGTCTTTTGTTTTTTTTAATGAAGTGGTAAAATAAAAAAATA
TATAACGAAGACCCCCCCCCCCCCTTTCNNCNNNNNAAAGAAAAGTGGGT
AGGCCTGGNNNNNNNCGGNCCCGNNNCCTTGGTCTCTGAAAAAAAAAAAT
TTAGGTGAACACTATAGTATGATACGAGGAATTCTCTGTTTAGCTATTTA
CCCCATTTTAAATTGATTTATGAGTTTCTACTTCTTGGNGTCTTATATAT
TTTGGACTTAGTTCTCTCTCAGTGTAAGGTTGGTGGGAATTTTTTCCAAT
ATGAAGGTTCATTTTTTCCAATGAAAAGGCTTTGGCTTGAAAAATTTTTT
AATTTCAAGAATCCAAGGTTTCAAGAAATGATTTTTAAAGCCTGAAAAAA
TGGGGGGGTTGGGTTAAAAAAAAATGGGCCAGGGAACAAAAGGGTTTTAA
GGGGAAAATTTTTCCCACTTGTGGGTTCTCAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_a08.b1 MSMg01no519_a08.b1 CHROMAT_FILE:
MSMg01no519_a08.b1 PHD_FILE: MSMg01no519_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:37 2005
         (684 letters)



>mm_chr8_71999339_72000422
          Length = 1084

 Score = 1102 bits (570), Expect = 0.0
 Identities = 654/682 (95%), Gaps = 4/682 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagccttacgaggtgaatagggcagtgaggtgctctgaaaacaaaaggaacctc 64
           |||||||||||  | || || ||||||||||||||||||| ||| |||||||||||||||
Sbjct: 205 gaattccagccagatgaagttaatagggcagtgaggtgctttgagaacaaaaggaacctc 264

                                                                       
Query: 65  tctcttctgcactacactaacccttccccaatgaatgatcttccacagttgtccattaga 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tctcttctgcactacactaacccttccccaatgaatgatcttctacagttgtccattaga 324

                                                                       
Query: 125 tacctgggatatcagaacagtggagctgaattgtaaaatgcatgaatcaagtatgtcact 184
           ||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct: 325 tacctgggatatcagaacagtggggctgaattgtgaaatgcatgaataaagtatgtcact 384

                                                                       
Query: 185 acctacagcagaggggaattgctgagttccatggatggattctatatatgccttccaaaa 244
           ||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 385 acctatagcagaggggaattgctgagttccatttatggattctatatatgccttccaaaa 444

                                                                       
Query: 245 tctcacctattagctctatgtcaaagtaacttttatgcactaggtgtaattgtaatcttt 304
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctcacctgttaactctatgtcaaagtaacttttatgcactaggtgtaattgtaatcttt 504

                                                                       
Query: 305 gatgctta-ctacctccatctgagtgataacctagacctagtcctggaagcttctagcct 363
           |||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 505 gatgct-agctacctccatctgagtgataacctaggcctagtcctggaagcttctcgcct 563

                                                                       
Query: 364 ctgtgaaacttagcataggcctagaatattttctgcctctcatacttactgctgaataag 423
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 564 ctgtgaaacttagcataggcctagaatattgtcagcctctcatacttactgctgaataag 623

                                                                       
Query: 424 cacaccgctatttctggttctttttcatctctggctgactggttcaactcaggtgttcta 483
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cacaccgttatttctggttctttttcatctctggctgactggttcaactcaggtgttcta 683

                                                                       
Query: 484 gctcaaagctgctccccatgctaactgattcagtctggattctctcttggcctctgatgt 543
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 gctcaaagctgctccccatgctaactgattcagcctggattctctcttggcctctgatgt 743

                                                                       
Query: 544 ttttt-gttctgcttgacctcaaactaactagcaattttttttctaatcttctgactcct 602
           ||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 744 ttttttgttctgcttgacctcaaactaactagcaattttttc-ctaatcttctgactcct 802

                                                                       
Query: 603 tcatattctctggttcattctgccttcacccgtgtcttgctggttctctcttcaatgaat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcatattctctggttcattctgccttcacccgtgtcttgctggttctctcttcaatgaat 862

                                 
Query: 663 ctctctaaaactgtctgggtaa 684
           |||||||||||| |||||||||
Sbjct: 863 ctctctaaaactttctgggtaa 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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