BAC Information

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BAC

Clone NameMSMg01-519L03
Chromosome8 (Build37)
Map Location 72,617,794 - 72,744,030
singlet/doubletdoublet
Overlap geneNcan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42
Upstream geneAtp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4
Downstream geneArmc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519L03.T7 (MSMg01no519_l03.b1)MSMg01-519L03.TJ (MSMg01no519_l03.g1)
ACCAG590905AG590906
length728718
length of high quality
(start - end)		599 (42 - 640)541 (68 - 608)
definitionCHROMAT_FILE: MSMg01no519_l03.b1 PHD_FILE: MSMg01no519_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:29 2005CHROMAT_FILE: MSMg01no519_l03.g1 PHD_FILE: MSMg01no519_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:52:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,617,794 - 72,618,388)(72,743,490 - 72,744,030)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGTCTGACTGAGGCCCTGTCCAAAAAATCAACACTTACAGTAATTAT
AACGCACAGAAGGAAATTCTTGCTCTAGCTCCTCTATCGTAGTCTGTAAC
TTTGTCTTTCTCTTACAATCAAGTGGAAATGGGAGACTAAGGACCACGTG
GGCTGCTGAGAGGATTCAAGGGCATCTCACAAGGCTTTACACGGCTTCTA
TTCAGTAACTGCCCCAGGCTTTCATTACCTCCTGTGAGCAATGCAGCTCA
GTAAACACTTAGGAAGAGCTGGGCATGGACCCCAGAACCTGTGCACCCAT
CCCTGCCCTGACCCACCCAATCCTACAGTTTTTGAAATTTTTACTTATTT
ATTTTGTGCTTGTGCAGTGTGTGTGGGGGGAGAGGGTTGTGCGTGTGTTG
GAGAATCACCCACATTGTAGTGTGCAGTGGAGGTCAAATGCTACCCTTTA
AGGGTTTGCCGTGATCCTCCAGGCTAGCTGGCTCATGAGCTTCCTATAGT
CTCAGCACAGGGATGCTGGCACCAGGGTTCACACCCTACCTGGCTTTTCA
CTTTTAAAACATGGGTCCCAGGGCTTAAACGGACTTCTTCANGCTTATGC
AGCATCTTTACCCTCAGGGTTAAGCTCAGGCTCCACTGTGGCTTTAACAC
AAATTCATAGATTCTACCACACTGCATG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGGCACTGCTGGTAGAGGCAGGGATTTCAGAT
TCATCCATCAGGGTCTGCCCTGGCCCTGGTCCTTGATATTGCAGCCTGCT
AATGCAGGCTAAAGGGGTCTCTTCATAGCTCTGTTGGTGCTGTGTCCACA
GCCTCATCGAGAGCAGGCACTTGGCACCTGAGGTAGCTACAGGCACTGGG
GTATTTGGGCCAGAGCCTGGTCTATATAGGTCACTGAGGCTGGGGTCAAG
GACAGTCTATCTGCTCTGAGTGAGATCTGTGGCTGAGAGCAGGTAGCCTG
ACTTGTGGGAACCTCTCTGTTTCTGAAACACTGGGTTGTGTTGGACATGG
AGAGGAATAGGGATCATCAGCTCCAGCCCCATTGTCCTAGGAATGCTGCC
TCACAGCAGCCCCAGTCCATGTCTGAGCCTCAGTTTCCCCAATGTGAAAC
ATAACACCATTGTCACCAATTCAAATGCTCACACCACCTACCCAACATTG
TGCAGGTCCCTAAGCAGCTAGCTGCTCCTGAACTTTTGTGACCCGTGGGG
TTCAGAGTAACCTCAGAACCTCCTGCCTCTGTCTCATATTCCCTTCCCCC
TCTGGTAAGTCTGGACCATGTATGCCTTTCCCAGAAGGCTCTTAGTTTCC
ATGGGAACCAGTCGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_l03.b1 MSMg01no519_l03.b1 CHROMAT_FILE:
MSMg01no519_l03.b1 PHD_FILE: MSMg01no519_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:29 2005
         (599 letters)



>mm_chr8_72617590_72618588
          Length = 999

 Score = 1135 bits (587), Expect = 0.0
 Identities = 593/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggtctgactgaggccctgtccaaaaaatcaacacttacagtaattataacgc 64
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggccagactgaggccctgtccaaaaaatcaacacttacagtaattataacgc 264

                                                                       
Query: 65  acagaaggaaattcttgctctagctcctctatcgtagtctgtaactttgtctttctctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagaaggaaattcttgctctagctcctctatcgtagtctgtaactttgtctttctctta 324

                                                                       
Query: 125 caatcaagtggaaatgggagactaaggaccacgtgggctgctgagaggattcaagggcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatcaagtggaaatgggagactaaggaccacgtgggctgctgagaggattcaagggcat 384

                                                                       
Query: 185 ctcacaaggctttacacggcttctattcagtaactgccccaggctttcattacctcctgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcacaaggctttacacggcttctattcagtaactgccccaggctttcattacctcctgt 444

                                                                       
Query: 245 gagcaatgcagctcagtaaacacttaggaagagctgggcatggaccccagaacctgtgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagcaatgcagctcagtaaacacttaggaagagctgggcatggaccccagaacctgtgca 504

                                                                       
Query: 305 cccatccctgccctgacccacccaatcctacagtttttgaaatttttacttatttatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccatccctgccctgacccacccaatcctacagtttttgaaatttttacttatttatttt 564

                                                                       
Query: 365 gtgcttgtgcagtgtgtgtggggggagagggttgtgcgtgtgttggagaatcacccacat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgcttgtgcagtgtgtgtggggggagagggttgtgcgtgtgttggagaatcacccacat 624

                                                                       
Query: 425 tgtagtgtgcagtggaggtcaaatgctaccctttaagggtttgccgtgatcctccaggct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtagtgtgcagtggaggtcaaatgctaccctttaagggtttgccgtgatcctccaggct 684

                                                                       
Query: 485 agctggctcatgagcttcctatagtctcagcacagggatgctggcaccagggttcacacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agctggctcatgagcttcctatagtctcagcacagggatgctggcaccagggttcacacc 744

                                                                  
Query: 545 ctacctggcttttcacttttaaaacatgggtcccagggcttaaacggacttcttc 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctacctggcttttcacttttaaaacatgggtcccagggcttaaacggacttcttc 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_l03.g1 MSMg01no519_l03.g1 CHROMAT_FILE:
MSMg01no519_l03.g1 PHD_FILE: MSMg01no519_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:29 2005
         (541 letters)



>mm_chr8_72743290_72744230
          Length = 941

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggcactgctggtagaggcagggatttcagattcatccatcagggtctgccctggccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggcactgctggtagaggcagggatttcagattcatccatcagggtctgccctggccct 682

                                                                       
Query: 61  ggtccttgatattgcagcctgctaatgcaggctaaaggggtctcttcatagctctgttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtccttgatattgcagcctgctaatgcaggctaaaggggtctcttcatagctctgttgg 622

                                                                       
Query: 121 tgctgtgtccacagcctcatcgagagcaggcacttggcacctgaggtagctacaggcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctgtgtccacagcctcatcgagagcaggcacttggcacctgaggtagctacaggcact 562

                                                                       
Query: 181 ggggtatttgggccagagcctggtctatataggtcactgaggctggggtcaaggacagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggtatttgggccagagcctggtctatataggtcactgaggctggggtcaaggacagtc 502

                                                                       
Query: 241 tatctgctctgagtgagatctgtggctgagagcaggtagcctgacttgtgggaacctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatctgctctgagtgagatctgtggctgagagcaggtagcctgacttgtgggaacctctc 442

                                                                       
Query: 301 tgtttctgaaacactgggttgtgttggacatggagaggaatagggatcatcagctccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttctgaaacactgggttgtgttggacatggagaggaatagggatcatcagctccagc 382

                                                                       
Query: 361 cccattgtcctaggaatgctgcctcacagcagccccagtccatgtctgagcctcagtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccattgtcctaggaatgctgcctcacagcagccccagtccatgtctgagcctcagtttc 322

                                                                       
Query: 421 cccaatgtgaaacataacaccattgtcaccaattcaaatgctcacaccacctacccaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaatgtgaaacataacaccattgtcaccaattcaaatgctcacaccacctacccaaca 262

                                                                       
Query: 481 ttgtgcaggtccctaagcagctagctgctcctgaacttttgtgacccgtggggttcagag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgcaggtccctaagcagctagctgctcctgaacttttgtgacccgtggggttcagag 202

            
Query: 541 t 541
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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