NNNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACGTGTAGAAGAACAGAGAGGACTCCGAGGGAGAGGC
TCCATGATGTTGGCTTCCTCCCTATGTGTCCTCAACCTTCCCCAATTGGC
CTTTTGTTTCCATTGTTCCTGAGTGTCACCGGACAGAAGCCACTTTGCAG
TGACCTTCCCCAGGAAACATTTTATTCCTTTTTGTTCCTATTGCCTTCCT
CTCTGCAGAATCCTGAGAACAGGCCATTCATCAAAGACAGACGAGTTTCT
TACAATGCCCAGGAAGTTAGGACACCAAGGGACACCTTGTGAGGGGAGAT
CTGTGATCCACCATCACCTGCTAGGATGGACGTGGGGGAAGACTAGAGAG
GGAGGAGTGAAAGACAGGGGGAGAGCGAAAAGGAGGGAGAAGGAAGAGAG
AGAAGGGGAGAAGAGACAGGGAGAGAGGAGACAGGAAGGGAGGGTGACTG
GGGAGAGTTTTCCTATGAAACCCCCTTCCAGGAGGCATAGTCAGCCCTCT
TGGAGCACTACTCTTAGTCCCCATCCCTTCTCGAAGGTGTCACCTCTTAA
CAACGCGGCAGCAGAGAATGAAAGTCTTTAAAGTCCGGGAACGTCACAGC
AGCCTTGGAGGCAGCTTCGTGTGCTGTGTGTGACTGACACAGCTGTGTGA
TCCAAGTACTCGACTAAGCAATGACACATTTCCAAGCC

NCCCCNNNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAATACAGAAAA
TACCTCTTATTTTCTCCTTTTTATTGAAAATATTCATAACATGTAAACAT
ATTTTACCTTTTCAAAGTTGTGTAAGAAACTCTGTGGTCGTTTCTAGATA
AAAAATTTCCAATTACTTTTGGGTTGGGAATTTTTTTCTTTCACACATTC
CTCAAAATTTACATTTTTCTATTACAGCATAATGAAGAAAAAGTAATATT
AATTCAGCAATTTTTGCACTTTATTTTCCTTGATGATTTTTTTCAATTAT
ATTTTATGTTTCTGTGAATTCAAACATTGATAGATATTAGTATAAGGACA
CATTTTGCTTGTGTGTGTGTGTGTGTGTATACACATTTGCACCAGGCATA
ATTTGATATATACATGATGCACTACACACATAGGTTGAATACTCTAAATT
TCTAGTATTAGAGATAAGTTAAAAGCAACAGGCTAGAGTTGTCATCATAA
CTGTTCTTCAAAATATACTGGGAATATTAATGTAATGCTAATATTATCCT
AATCTACCCAATATTTGTGTTCACCCTAATATATCCTTGTAATTATATCC
CTCCTATCATCCCTATTATTTGGAAATAAACGCTAGTTAAGATGGAGGAA
GTATATTGTGTTCCTTGAGAAAAGATGTG

Query= MSMg01no521_b04.b1 MSMg01no521_b04.b1 CHROMAT_FILE:
MSMg01no521_b04.b1 PHD_FILE: MSMg01no521_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:18 2005
         (678 letters)



>mm_chr8_15496611_15497688
          Length = 1078

 Score = 1009 bits (522), Expect = 0.0
 Identities = 537/542 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacgtgtagaagaacagagaggactccgagggagaggctccatgatgttggct 63
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 542 ggaattctacgtgtagaagaacagagaggactctgagggagaggctccatgatgttggct 483

                                                                       
Query: 64  tcctccctatgtgtcctcaaccttccccaattggccttttgtttccattgttcctgagtg 123
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 482 tcctccctatgtgtcctcaaccttctccaattggccttttgtttccattgttcctgagtg 423

                                                                       
Query: 124 tcaccggacagaagccactttgcagtgaccttccccaggaaacattttattcctttttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tcaccggacagaagccactttgcagtgaccttccccaggaaacattttattcctttttgt 363

                                                                       
Query: 184 tcctattgccttcctctctgcagaatcctgagaacaggccattcatcaaagacagacgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcctattgccttcctctctgcagaatcctgagaacaggccattcatcaaagacagacgag 303

                                                                       
Query: 244 tttcttacaatgcccaggaagttaggacaccaagggacaccttgtgaggggagatctgtg 303
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 302 tttcttacaatgcccaggaagttagggcaccaagggacaccttgtgaggggagatctgtg 243

                                                                       
Query: 304 atccaccatcacctgctaggatggacgtgggggaagactagagagggaggagtgaaagac 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 242 atccaccatcacctgctaggatggacgtggggggagactagagagggaggagtgaaagac 183

                                                                       
Query: 364 agggggagagcgaaaaggagggagaaggaagagagagaaggggagaagagacagggagag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agggggagagcgaaaaggagggagaaggaagagagagaaggggagaagagacagggagag 123

                                                                       
Query: 424 aggagacaggaagggagggtgactggggagagttttcctatgaaacccccttccaggagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aggagacaggaagggagggtgactggggagagttttcctatgaaacccccttccaggagg 63

                                                                       
Query: 484 catagtcagccctcttggagcactactcttagtccccatcccttctcgaaggtgtcacct 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 62  catagtcagccctcttggagcactactcttagtccccatcccttctcgaaggtgccacct 3

             
Query: 544 ct 545
           ||
Sbjct: 2   ct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space:   713424
Effective search space used:   713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_b04.g1 MSMg01no521_b04.g1 CHROMAT_FILE:
MSMg01no521_b04.g1 PHD_FILE: MSMg01no521_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:18 2005
         (604 letters)



>mm_chr8_15472376_15473379
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaatacagaaaatacctcttattttctcctttttattgaaaatattcataacatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaatacagaaaatacctcttattttctcctttttattgaaaatattcataacatgtaa 260

                                                                       
Query: 61  acatattttaccttttcaaagttgtgtaagaaactctgtggtcgtttctagataaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatattttaccttttcaaagttgtgtaagaaactctgtggtcgtttctagataaaaaat 320

                                                                       
Query: 121 ttccaattacttttgggttgggaatttttttctttcacacattcctcaaaatttacattt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaattacttctgggttgggaatttttttctttcacacattcctcaaaatttacattt 380

                                                                       
Query: 181 ttctattacagcataatgaagaaaaagtaatattaattcagcaatttttgcactttattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctattacagcataatgaagaaaaagtaatattaattcagcaatttttgcactttattt 440

                                                                       
Query: 241 tccttgatgatttttttcaattatattttatgtttctgtgaattcaaacattgatagata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccttgatgatttttttcaattatattttatgtttctgtgaattcaaacattgatagata 500

                                                                       
Query: 301 ttagtataaggacacattttgcttgtgtgtgtgtgtgtgtgtatacacatttgcaccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagtataaggacacattttgcttgtgtgtgtgtgtgtgtgtatacacatttgcaccagg 560

                                                                       
Query: 361 cataatttgatatatacatgatgcactacacacataggttgaatactctaaatttctagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cataatttgatatatacatgatgcactacacacataggttgaatactctaaatttctagt 620

                                                                       
Query: 421 attagagataagttaaaagcaacaggctagagttgtcatcataactgttcttcaaaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attagagataagttaaaagcaacaggctagagttgtcatcataactgttcttcaaaatat 680

                                                                       
Query: 481 actgggaatattaatgtaatgctaatattatcctaatctacccaatatttgtgttcaccc 540
           |||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 681 actgggaatattaaagtaatgctcatagtatcctaatctacccaatatttgtgttcaccc 740

                                                                       
Query: 541 taatatatccttgtaattatatccctcctatcatccctattatttggaaataaacgctag 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taatttatccttgtaattatatccctcctatcatccctattatttggaaataaacgctag 800

               
Query: 601 ttaa 604
           ||||
Sbjct: 801 ttaa 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)