BAC Information

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BAC

Clone NameMSMg01-521K08
Chromosome8 (Build37)
Map Location 47,002,707 - 47,003,118
singlet/doubletsinglet
Overlap genePdlim3
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2
Downstream geneCcdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521K08.T7 (MSMg01no521_k08.b1)MSMg01-521K08.TJ (MSMg01no521_k08.g1)
ACCAG592393AG592394
length747738
length of high quality
(start - end)
412 (72 - 483)438 (77 - 514)
definitionCHROMAT_FILE: MSMg01no521_k08.b1 PHD_FILE: MSMg01no521_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:02 2005CHROMAT_FILE: MSMg01no521_k08.g1 PHD_FILE: MSMg01no521_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTTGGGCTAAAGTGCACACTTTAAAATAGACGTTAAAGTGC
TCGCTTTAAAATAGTCTCCGAGTACAAACTGGAGCCAGCTGTTCCCCACC
ATAAATGGAAACACTTTGTTTTTCAGATGACCGTCCGGCTGGAACTCGAA
GCGTGAGGGCTCCGGTTACGAAAGTCCACGGTGGGGCTGGCAGTGCCCAG
AGGATGCCGCTCTGTGACAAGTGTGGGAGTGGTATTGTGTATGTCTCGCT
TTTAAGTGACTTGGAAATTCACTCTGTGTCTTGCTGGCGGTTTTCCATCT
CTTGTACTTTATATAGAAAAGGCAATTTTGGAAAAGTTAAATTTCTATTC
ATTAACTTAAAATAGAACATTTATAACACTTTAGCATATCTGGCCAATGT
GCCTTAGTCATAACCCCAAATTGTCATAGAACTTAAGTCAGCAGTCTGTA
TCTTCAGAAATGCTTGTGTGAGATAAAAATAAACTAAAACAAAACTGCCC
AAACATGTATATGAAAACAATTTCTATGAATCAAGCTTTCCAATTTAAAA
AATAATTTCATTAATATATAATCTTTGGATACTTACTTTTCTATATAGAA
GAGGAAACAAATGCGGGGACCATTAGATTATGAGTTAATAAGCATTTTGT
GTCCAGCAATTTTAATTATACCATTATCAAGACGCGAATTCTTAAAA
NAACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTAGCTCTGTACTCAATTT
TTTGATTGGGTTATTTGGTTTTTTGGAGCTTGTTGAGTTCTTTATATAAT
TTTGGATATTAGCCCTCTGTCATATGTTGAGTTAGTAAAGATCTCTCCCA
ATTTGTAGGCTGCCATTTTGTCCTATTGACAGTGTCCTTTACCTTATAGA
AGTTTTTCAGCTTTATATGGTCCCATTTATTAATTCTTGACCTTAGTGTC
TGAGTCATTGGTATTCTGTTCAGGAAATTTTCTCCTGTACCAATGCGTTC
AATGTTATTTCCTACTTTCTCCTCTAATAGACTGTGTCTGGTTTTACATT
GAGGTCTTTGATCCATTTGGACTTGAGTTTTGTACAAGGTGATAAATATG
GATCTATTTGCATTCTTCTACATACAGACATCCAGGTAGACCAGCAACAT
TTATTGAAGATACTCTCCCCGTTCTATTGTATGCTTTTGGCTTCTTTGTC
ATAAGTCAAGTGTCCATAGGTATGTGGGTTTATTTCTGGGGCTTTGATTC
AATTACATTGATTCACCTGGCTTGTTCTATTTCAATACCATGTAGTCTTC
ATTACTATTGATCTGTAGTATGGCTTTATGTCATGGATGGTGATACCTCC
ATAAATTCTTTTACTCTTTAAGATTGTTTTGTCTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_k08.b1 MSMg01no521_k08.b1 CHROMAT_FILE:
MSMg01no521_k08.b1 PHD_FILE: MSMg01no521_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:02 2005
         (412 letters)



>mm_chr8_47002507_47003318
          Length = 812

 Score =  797 bits (412), Expect = 0.0
 Identities = 412/412 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcacactttaaaatagacgttaaagtgctcgctttaaaatagtctccgagtacaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcacactttaaaatagacgttaaagtgctcgctttaaaatagtctccgagtacaaactg 260

                                                                       
Query: 61  gagccagctgttccccaccataaatggaaacactttgtttttcagatgaccgtccggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagccagctgttccccaccataaatggaaacactttgtttttcagatgaccgtccggctg 320

                                                                       
Query: 121 gaactcgaagcgtgagggctccggttacgaaagtccacggtggggctggcagtgcccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaactcgaagcgtgagggctccggttacgaaagtccacggtggggctggcagtgcccaga 380

                                                                       
Query: 181 ggatgccgctctgtgacaagtgtgggagtggtattgtgtatgtctcgcttttaagtgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggatgccgctctgtgacaagtgtgggagtggtattgtgtatgtctcgcttttaagtgact 440

                                                                       
Query: 241 tggaaattcactctgtgtcttgctggcggttttccatctcttgtactttatatagaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggaaattcactctgtgtcttgctggcggttttccatctcttgtactttatatagaaaag 500

                                                                       
Query: 301 gcaattttggaaaagttaaatttctattcattaacttaaaatagaacatttataacactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaattttggaaaagttaaatttctattcattaacttaaaatagaacatttataacactt 560

                                                               
Query: 361 tagcatatctggccaatgtgccttagtcataaccccaaattgtcatagaact 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcatatctggccaatgtgccttagtcataaccccaaattgtcatagaact 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)