BAC Information

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BAC

Clone NameMSMg01-521N07
Chromosome8 (Build37)
Map Location 10,679,212 - 10,679,671
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b, Myo16
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521N07.T7 (MSMg01no521_n07.b1)MSMg01-521N07.TJ (MSMg01no521_n07.g1)
ACCAG592534AG592535
length746730
length of high quality
(start - end)
84 (123 - 206)498 (79 - 576)
definitionCHROMAT_FILE: MSMg01no521_n07.b1 PHD_FILE: MSMg01no521_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:17 2005CHROMAT_FILE: MSMg01no521_n07.g1 PHD_FILE: MSMg01no521_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:55:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCTCCAATTATTTGCTTCCGCTAAACCACTCACTATTTTTAGAGGAT
TTGTGTAATTCACCTCTGACCTCCACACACATGCACAGACAATCGTACCC
TTGCACACCCCATACATAAACACATATGTAAATAATGAAATGTCATTGTC
ATGTGTTTTTCCCTAAATAAGATTAATCTTCTACAGTGACCCTTCATCCA
TCATGATCAATCTTGCTGCCTCACTGGGCAGCCACCTGGGACTATGCATA
ATCAATGTAGAGTTTGCACTCTGGTCCCTAAGCAGTCAACAATCCATTGC
TGTATCAATCTCAAGGTTGTCAGTGCATTCCATTCCCCACCCTGTGCCTT
ACCCAGAGTTCTCAATGATTCTATGCCCAGAATATATGTATAAGTTACTA
TGAAACAAAAGAGCAACTCTGACAAGAGGAGGGATTTTCCCAGGAACTGG
GGATGTTTGACTAAATCTTCAGTCTCTAAGGCTCCCCTTTCTGCTTGTCT
TTGGCCCATCCCTTGTTCATCATGCTCCACATGTCATAGCTGATCATATG
TTTTGTTATTTTTATTTCTGTCTCCGTTAACTTCTTCACTCTCTGTCATT
CCCAGTAGACAGCTTATTGTTTTGAAAAGGCTGCCCATAGACTTATTTAA
TTTCTTTGACCGGTTGACAGCTAATCATCCTTTGCATGGTACAAACTTGC
TATGGTTTACTTTTATTCTCCGCGCTTGTCTACTTTGTTCTACTTT
TTTTCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGTTGAGGGCTGGAAAGAT
GGCTCCACAGTTAATATCACTGGATGATCTTCCAGATGACTCCTTTCGAT
TCCTAGCACCCGTATAAACGGATGTGTAGATAACACTCATCGTAGTCTAT
AAATTCCAGTTCCAGGAAATTGATTGCCCTCTTCTGTCCTTCACGGGTAG
AAGGCATGCACATGATGCACAGACATACATGCAGAAAAGAAACCCACTCA
CATAAATAAAAATAAAAATAAAGAATAATTGTTCTGTTTCAATCAAGCCA
TTCCATCACCTCCCAACAGGAAGTTTTGAGTTGCTGATTTCAACAAAGAA
AGAAGGTCTGCGAATGGACTGATTCGGAGAAAAGTTCTGGTATTTTAGAT
TCCCCAGACTTCATTATGCAGAGAGCACGTCACAGTGTTTCTGTTCCAGT
TTTGATGCTATGCAACACAGCCTACTCAGTTGATAAACATTAGCTCATGT
CAAAATGTTTCCCTTAGATCTTGCAAGTTTTCAAGAAGCCATTGCCTACC
CACAGGTATGCATGCTGTTTCCCCTTTCCAGCTCTTTGCCCTTTTGTGTC
TCCTGTGCCTGTAGCTTAGGATGGTTGGAATTGCATGTTTGCTACACATG
ACTGCATGTCATGGACCTGGCTGGTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_n07.g1 MSMg01no521_n07.g1 CHROMAT_FILE:
MSMg01no521_n07.g1 PHD_FILE: MSMg01no521_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:17 2005
         (498 letters)



>mm_chr8_10678774_10679671
          Length = 898

 Score =  882 bits (456), Expect = 0.0
 Identities = 459/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 39  tcactggatgatcttccagatgactcctttcgattcctagcacccgtataaacggatgtg 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tcactggatgatcttccagatgactcctttcgattcctagcacccgtataaacggatgtg 839

                                                                       
Query: 99  tagataacactcatcgtagtctataaattccagttccaggaaattgattgccctcttctg 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tagataacactcatcgtagtctataaattccagttccaggaaattgattgccctcttctg 779

                                                                       
Query: 159 tccttcacgggtagaaggcatgcacatgatgcacagacatacatgcagaaaagaaaccca 218
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 778 tccttcacgggtagaaggcatgcacgtgatgcacagacatacatgcagaaaagaaaccca 719

                                                                       
Query: 219 ctcacataaataaaaataaaaataaagaataattgttctgtttcaatcaagccattccat 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ctcacataaataaaaataaaaataaagaataattgttctgtttcaatcaagccattccat 659

                                                                       
Query: 279 cacctcccaacaggaagttttgagttgctgatttcaacaaagaaagaaggtctgcgaatg 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cacctcccaacaggaagttttgagttgctgatttcaacaaagaaagaaggtctgcgaatg 599

                                                                       
Query: 339 gactgattcggagaaaagttctggtattttagattccccagacttcattatgcagagagc 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gactgattcggagaaaagttctggtattttagattccccagacttcattatgcagagagc 539

                                                                       
Query: 399 acgtcacagtgtttctgttccagttttgatgctatgcaacacagcctactcagttgataa 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acgtcacagtgtttctgttccagttttgatgctatgcaacacagcctactcagttgataa 479

                                                   
Query: 459 acattagctcatgtcaaaatgtttcccttagatcttgcaa 498
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 acattagctcatgtcaaaatgtttcccttagatcttgcaa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)