Query= MSMg01no522_k14.b1 MSMg01no522_k14.b1 CHROMAT_FILE:
MSMg01no522_k14.b1 PHD_FILE: MSMg01no522_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:19 2005
(472 letters)
>mm_chr8_105681675_105682546
Length = 872
Score = 716 bits (370), Expect = 0.0
Identities = 440/492 (89%), Gaps = 49/492 (9%)
Strand = Plus / Minus
Query: 5 gaattccacaacagctca-cgctatacagagaaaccctgtctcgaaacaaacaaacaaac 63
|||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaattccagaacagc-cagggctatacagagaaaccctgtctcgaaacaaacaaacaaac 526
Query: 64 aaaaaacccataaagc-------aaaaaaaca----aaaacaaaac------------aa 100
|||||||||||||||| ||||||||| |||||||||| ||
Sbjct: 525 aaaaaacccataaagcaaaaaaaaaaaaaacaaaacaaaacaaaacaaaaaaaaaaaaaa 466
Query: 101 aacaacaaaaaacaattcattcttgaagatgatctgtggccaccaccacaatcattatgt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aacaacaaaaaacaattcattcttgaagatgatctgtggccaccaccacaatcattatgt 406
Query: 161 aagcacaaagtttcaactaattaaaataacccctataccaaaacaaacagacagataaaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aagcacaaagtttcaactaattaaaataacccctataccaaaacaaacagacagataaaa 346
Query: 221 aatcaaaaacaaaacaacaacactccctggcacacacacacacacacacacacacacaca 280
|||||||||||||||||||||||||||||| ||||||
Sbjct: 345 aatcaaaaacaaaacaacaacactccctgg------------------------cacaca 310
Query: 281 cacacacacacacacacacacacacacacacacacaattttgtaggaaagtgtaaaacac 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 cacacacacacacacacacacacacacacacacacaattttgtaggaaagtgtaaaacac 250
Query: 341 acatatattattatttctccaccatccctctactacaaactctgtaataatgatgcgttt 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 249 acatatattattatttctccaccatccctctactacaaactctgtaataatgatgtgttt 190
Query: 401 acagagagagatagaggaatagaggaagggaaggaagaagaggagaagggaaggagggag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acagagagagatagaggaatagaggaagggaaggaagaagaggagaagggaaggagggag 130
Query: 461 agagggaggagg 472
||||||||||||
Sbjct: 129 agagggaggagg 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 29
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_k14.g1 MSMg01no522_k14.g1 CHROMAT_FILE:
MSMg01no522_k14.g1 PHD_FILE: MSMg01no522_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:19 2005
(435 letters)
>mm_chr8_105516743_105517580
Length = 838
Score = 777 bits (402), Expect = 0.0
Identities = 428/438 (97%), Gaps = 5/438 (1%)
Strand = Plus / Plus
Query: 1 aaagtgccaagtgggttaattttatattctagttatgtatgtgtgttttccacatcagtc 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagtgccaagtaggttaattttatattctagttatgtatgtgtgttttccacatcagtc 260
Query: 61 aaaatagaaaacccaaagtcgtgcagataaaaacacacacataaaaggaatacctttaaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatagaaaacccaaagtcatgcagataaaaacacacacataaaaggaatacctttaaa 320
Query: 121 ccttctatcagaactttctcttctgcagcttacataataacaaagttttatagcacataa 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ccttctatcagaactttctcttctgcagcttacataataacaacgttttatagcacataa 380
Query: 181 ctctaacagccaagggagtggatcaagagtttgagcaatcct---aaaggcacacaggag 237
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 ctctaacagccaagggagtggatcaagagtttgagcaatcctcctaaaggcacacaggag 440
Query: 238 ggaagaggtggaacttgaaggaaagttcaggcccaccttgattccatggttcttcctcat 297
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagaggtgggagttgaaggaaagttcaggcccaccttgattccatggttcttcctcat 500
Query: 298 ccatagggaatctctgagaaatgatttcagtcatcataagcattggaccaaatagttaac 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatagggaatctctgagaaatgatttcagtcatcataagcattggaccaaatagttaac 560
Query: 358 tacacatatacatacacacagagagagacgggggggggaggga-gagagagagagagaga 416
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 561 tacacatatacatacacacagagagagacggggggggg-gggaagagagagagagagaga 619
Query: 417 gagagagagagagagaga 434
||||||||||||||||||
Sbjct: 620 gagagagagagagagaga 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 838
Length adjustment: 9
Effective length of query: 426
Effective length of database: 829
Effective search space: 353154
Effective search space used: 353154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
