BAC Information

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BAC

Clone NameMSMg01-522L09
Chromosome8 (Build37)
Map Location 58,156,922 - 58,157,381
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522L09.T7 (MSMg01no522_l09.b1)MSMg01-522L09.TJ (MSMg01no522_l09.g1)
ACCAG593204AG593205
length751813
length of high quality
(start - end)		496 (52 - 547)350 (83 - 432)
definitionCHROMAT_FILE: MSMg01no522_l09.b1 PHD_FILE: MSMg01no522_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:23 2005CHROMAT_FILE: MSMg01no522_l09.g1 PHD_FILE: MSMg01no522_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTGTATCATCCCTTACCATAGGACACAATTTGCTAGCTC
AGTGACTAAAAAGGAAACAAATAACAACAACAACTAGCTTACTCCAGTGG
CAAATTATAAATGCTAACATTGATCAAAATGGAAGTTTCTGTTAACCCTT
GTCCAACTCATTGTTTAATATATTCATAATATATTCCAATCTTGAAACTA
ATTATTTATAACTATTATTAAACATTTTAAAGAAACTAAAGCTTTTATAG
AGCCCTCTAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCACTCTGTCCGTGTGTCTCCTATAATTTTGAGAG
TGTATTTTAGTTTCAAAAATACTCCTTTCTCTTTATCTCCCTCCAAACTC
TCCCATACATCCCTTTCCAGTCTCCTTCAAATTCATGGCCTCCATTTGTT
TCAATCTTTATTGCATGTATATATGCATTTGTGTATACATGTGTATATAC
CTGTGTATAAAATATATACATGTGTATAGTCTAAGTATTACTGGGTGAGT
TCAAAAAAGTGTTAATTTTGTGTGTGTCTTCAGGGTCCACCATTTGCCAT
GGTACAACCAATGATGTGCTCTTTGCTAGGGAAAGATACCTTTCCCGATC
CCAGCTTTTTCACTTTGCCTGAAGAATTTGTGTAGAATTGAAGCCTTGTG
G

NNNNCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCAAGGTGCAGATAA
CCCTAGACACAGAGGCACAGAATCCCATCTACAACCCTGAAATGCAAAGG
TGTGGCTGTGCACCTGATTCTATGCACCTGTGTGGACTTCCATTGGCTAC
AAGGTTGTGGGAAGAAGCAGCAAGAGGCTTGCAGCAAACAGGTGCCTCCA
ATAAGATTTCCTACTAAGGAAAGGAATTTGCCCTAAGGAGGTTCAGTGGG
TGGAGGTCACATGGCCGGGTCGCCATTTTGCAGTATGAGGAAATGTATGA
GGAGAACAGATTCCATCCTGTTTTGTTTGTTGGTTTACTTAGTTGTTTTT
GGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGNTNNNNNNNNNNNNNNNNN
NCTGTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTTT
NNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTTTTNTTTTTTNTTTTTTTTTTNNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTTNNTTTNT
TCTTTTTTTNNTNNTTTTTTTTTTNNNNNTNTTTTTCCTTTTTTTNNTTT
TTTTTTTTTTTTCTTNNTTTTTTTTTTTTTTTTNTTTTTTNNTTTTTTTN
TTTTTTTTTNNTTTTTTTTCCTNTCTTTTTNTTNTTTTTCTTTTTTTNTT
TTTTCCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_l09.b1 MSMg01no522_l09.b1 CHROMAT_FILE:
MSMg01no522_l09.b1 PHD_FILE: MSMg01no522_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:23 2005
         (496 letters)



>mm_chr8_58156922_58157817
          Length = 896

 Score =  808 bits (418), Expect = 0.0
 Identities = 454/476 (95%), Gaps = 16/476 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtatcatcccttaccataggacacaatttgctagctcagtgactaaaaagga 64
           |||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct: 460 gaattcttgtatcatcccttaccaaaagacacaatttgctagctcagtgacaaaaaagga 401

                                                                       
Query: 65  aacaaataacaacaacaactagcttactccagtggcaaattataaatgctaacattgatc 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 400 aacaaataacaacaacaactagcttgctccagtggcaaattataaatgctaacattgatc 341

                                                                       
Query: 125 aaaatggaagtttctgttaacccttgtccaactcattgtttaatatattcataatatatt 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 340 aaaatggaagtttctgttaacccttgtccaaatcattgtttaatatattcataatatatt 281

                                                                       
Query: 185 ccaatcttgaaactaattatttataactattattaaacattttaaagaaactaaagcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccaatcttgaaactaattatttataactattattaaacattttaaagaaactaaagcttt 221

                                                                       
Query: 245 tatagagccctctaattctctctctctctctctctctctctctctctctctctctctctc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 220 tatagagccctctaattctctctctctctctctctctctctctctctctctctctct--- 164

                                                                       
Query: 305 tctctctctctcactctgtccgtgtgtctcctataattttgagagtgtattttagtttca 364
                        |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 163 -------------ctctgtccatgtgtctcctataattttgagagtgtattttagtttca 117

                                                                       
Query: 365 aaaatactcctttctctttatctccctccaaactctcccatacatccctttccagtctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aaaatactcctttctctttatctccctccaaactctcccatacatccctttccagtctcc 57

                                                                   
Query: 425 ttcaaattcatggcctccatttgtttcaatctttattgcatgtatatatgcatttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  ttcaaattcatggcctccatttgtttcaatctttattgcatgtatatatgcatttg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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