BAC Information

Click to search

BAC

Clone NameMSMg01-525L07
Chromosome8 (Build37)
Map Location 89,693,058 - 89,896,609
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040165, Abcc12, Lonp2, Siah1a, ENSMUSG00000074178, BC004022, LOC666960, EG625298, EG330819
Downstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525L07.T7 (MSMg01no525_l07.b1)MSMg01-525L07.TJ (MSMg01no525_l07.g1)
ACCAG595476AG595477
length739737
length of high quality
(start - end)
468 (53 - 520)473 (67 - 539)
definitionCHROMAT_FILE: MSMg01no525_l07.b1 PHD_FILE: MSMg01no525_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:25 2005CHROMAT_FILE: MSMg01no525_l07.g1 PHD_FILE: MSMg01no525_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,693,058 - 89,693,525)(89,896,137 - 89,896,609)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXATTACTCGATAAATTAGCATCTGAAACCCAGATTTCTTTTTCTTTCAA
AATTTTAATTGGCAGTAATCATATTCAGTTGTAGAACATATGATAGGGTG
AATTAATGTAATAACACATAAGTATATGTATTTATGGGGTGCAATGTGAT
GTTTGCAAAGAGTGCATTATAGAATTGTTAAATATAACCAGCATGCCCCA
CCCCTCTTTTTGCAATGGAGACATTTAAAATTTACTCTTAGAGCAGTGAG
GAGTTAGCCCTGTAGAGTCCCATGTGAACAGAACAGAAGCAGATCCCCAA
AGGCCCATGGTACAAGGCCGTTAATGGTCTATTTCTTCCATCTTCTCTGC
GTTTATTCCTAGGAGGCCCGAGTACCCACCTACTCCAACAACGGTGGACC
AGAGCAAAGACCTCAAGACTCTAAAGCTTCAGCTTACACAGAAGCCAGGC
ATAAGTGCCCAGGCTGACCTGGCCTGATGTATCTTGTTCCTCTTGAGGCC
TCAGCTGCCTGACTCATGGCTAAGAACCTGGAACTGGTGCGTTGTCCTGA
GAATGGTCTCTGGCCCGACTCACCGCCCTCTGGGGTTATTTGTCACATCC
AACAATATTTCATTCAACTCCTATTTTCTTTGGGTTTTGGTCACACTACC
ATCTTTTTTTTTTTTAGAAAGATATTCATCTGTATTTCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCTGAAGGGAAGAAATAAGACTACATACAGGTA
TGGTGTGGCAATGAGGAACGTGGTATCCAGGAGCTGGGGTTCTAGGAACA
CCCCCCCCCCGGTATTGGACAGCTTCATAGTGATACAATGGTCCTCTCTT
CTCAGCTTCTCAAAATGCTGCAGGAGCTGGTGCTGTCTGCAGAGAGGAGC
CAGATGACTGCCCCAGGCCGGCCTCTTCTTTCTGAGCTGGCCCCGAGAAG
TGTGTGGGCAAGCTGGAGCTGGACAGAGGTGGGGCTCTGAAGCTCCCAAA
GCCCAGAAGATCAAAGGTTTATGGCCAAGCTCCCAGAGGGCATCCAGCTC
ATGGCAATAAGAGTGTACTAATATTATCCTGCACCATGCAGGTTCTCCTG
AGCACAGCAGATCTGAAGCCATAGCTCACCTGGGTGACTTTACAGTGGAG
TGTGCCAGATGGGCCAACTGTGTTATCTCTGCCCATCTCAGCATGCTGGG
GAGCCAGCAGCTGCTCCAGCAGGCTTAGTCTCTTGGACAGGGTAACAAAG
GGAAGAGTTGTCAGTTACTCAGCCTTATTCCCATTCCTCAACCTCTGACT
GGGGCTTCACCTTTTGGCCAAGCACTTTCCTTTCATCTTGTCCCTTTGCC
ATGGGTAAGAGGTAAAGCTGTAACTATCTTGTGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_l07.b1 MSMg01no525_l07.b1 CHROMAT_FILE:
MSMg01no525_l07.b1 PHD_FILE: MSMg01no525_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:25 2005
         (468 letters)



>mm_chr8_89692858_89693725
          Length = 868

 Score =  828 bits (428), Expect = 0.0
 Identities = 458/468 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   attactcgataaattagcatctgaaacccagatttctttttctttcaaaattttaattgg 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagtcgataaattagcatctgaaacccagatttctttttctttcaaaattttaattgg 260

                                                                       
Query: 61  cagtaatcatattcagttgtagaacatatgatagggtgaattaatgtaataacacataag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 cagtaatcatattcagttgtagaacatatgatagagtgaattaatgtaataacacataag 320

                                                                       
Query: 121 tatatgtatttatggggtgcaatgtgatgtttgcaaagagtgcattatagaattgttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatgtatttatggggtgcaatgtgatgtttgcaaagagtgcattatagaattgttaaa 380

                                                                       
Query: 181 tataaccagcatgccccacccctctttttgcaatggagacatttaaaatttactcttaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataaccagcatgccccacccctctttttgcaatggagacatttaaaatttactcttaga 440

                                                                       
Query: 241 gcagtgaggagttagccctgtagagtcccatgtgaacagaacagaagcagatccccaaag 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gcagtgaggagttagccctgtaaagtcccatgtgaacagaacagaagcagagccccaaag 500

                                                                       
Query: 301 gcccatggtacaaggccgttaatggtctatttcttccatcttctctgcgtttattcctag 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccatggtacaaggccgttcatggtctatttcttccatcttctctgcgtttattcctag 560

                                                                       
Query: 361 gaggcccgagtacccacctactccaacaacggtggaccagagcaaagacctcaagactct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 gaggcccgagtacccacctactccaacaacggtggaccagagcaaagacctcaagcctct 620

                                                           
Query: 421 aaagcttcagcttacacagaagccaggcataagtgcccaggctgacct 468
           ||||||||||||||||||||||||||||| | |||||| ||| |||||
Sbjct: 621 aaagcttcagcttacacagaagccaggcagaggtgccctggccgacct 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no525_l07.g1 MSMg01no525_l07.g1 CHROMAT_FILE:
MSMg01no525_l07.g1 PHD_FILE: MSMg01no525_l07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:25 2005
         (473 letters)



>mm_chr8_89895937_89896809
          Length = 873

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgaagggaagaaataagactacatacaggtatggtgtggcaatgaggaacgtggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atctgaagggaagaaataagactacatacaggtatggtgtggcaatgaggaacgtggtat 614

                                                                       
Query: 61  ccaggagctggggttctaggaacaccccccccccggtattggacagcttcatagtgatac 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccaggagctggggttctaggagcaccccccccccggtattggacagcttcatagtgatac 554

                                                                       
Query: 121 aatggtcctctcttctcagcttctcaaaatgctgcaggagctggtgctgtctgcagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aatggtcctctcttctcagcttctcaaaatgctgcaggagctggtgctgtctgcagagag 494

                                                                       
Query: 181 gagccagatgactgccccaggccggcctcttctttctgagctggccccgagaagtgtgtg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 gagccagatgactgccccaggccagcctcttctttctgagctggccccgagaagtgtgtg 434

                                                                       
Query: 241 ggcaagctggagctggacagaggtggggctctgaagctcccaaagcccagaagatcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggcaagctggagctggacagaggtggggctctgaagctcccaaagcccagaagatcaaag 374

                                                                       
Query: 301 gtttatggccaagctcccagagggcatccagctcatggcaataagagtgtactaatatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gtttatggccaagctcccagagggcatccagctcatggcaataagagtgtactaatatta 314

                                                                       
Query: 361 tcctgcaccatgcaggttctcctgagcacagcagatctgaagccatagctcacctgggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tcctgcaccatgcaggttctcctgagcacagcagatctgaagccatagctcacctgggtg 254

                                                                
Query: 421 actttacagtggagtgtgccagatgggccaactgtgttatctctgcccatctc 473
           ||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 253 actttacagtggagtgtgccagaggggccaactgtgtcatctctgcccatctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)