XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGCTTCATATTTTTGCAATAAATGTTCTAATCACATAAGAGTCTTTCC
AAACACTTTCCTAAGATTTTAGGATTCTTTGGAGTTTTTTCATGTCCAAG
TGTTTTGACTGCTGGCAGAGAATAGAAGACTTGACCCATTTCATAGATGT
ATGGTGAAGGTCAATCGTACTGTCCTTTTTATAGAACTCTTTGTGATCTC
ATTCCAAAATAAATTCTTGTGCTCTTTTAGTATAGCGTCATCTAAATCTC
ACACACATTCACATTCTGTCGCAGAGAAAAAACTCAGAATCCTGGCTGGT
CTACTTTTTTCAATTTTTTTTATTAGATATTTTCTTCATTTACATTTCAA
ATGCTATCCTGAAGGTCCCCTGTACCCTCCCCCCCCATGCCATGCTCCCC
TACCCACCCACTCCCATTTCTTGGCTCTGACATTCCCCTCTACTGGGGCA
TATAAAGTTTACAAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACTA
TGCCATCTTCTGCTACATATGTAGCTAGAGACATGAGCTCCGGGGGTACT
AGTTAGTTCAAATTGTTGTTCCACCTATAGGGTTGCAGACCCTTTTAGCT
CCTTAGGTACTTTCTCTAGCTCCTCCATTGGGGGTCCTTATTCTGTCCAA
TAGATGACTGAGAGCATCCTCTTCTGTATTTGCAGACACTGGCATAN

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAG
ATATGCTTTTAAATCCAGGTCTGCCTTTTCAGGTGTGTTAGGGTGTCCTG
GATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGG
CTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGTCAATCTCT
GGAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGAT
TTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGT
TTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAG
GTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCC
CAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGAC
CAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCCT
GCCGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGTGCCGCCCCAGAAT
CTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCAC
ACGGTCACCCGTGCAGCCTGCCTTCCGCGGAGTCCCGGAGCCAAGAAAGC
TCCCGCCGGCGCCTGTGTCACAAACCTCTCAGGCCAGGCAGACCCCCGTG
CTCTN

Query= MSMg01no526_j23.b1 MSMg01no526_j23.b1 CHROMAT_FILE:
MSMg01no526_j23.b1 PHD_FILE: MSMg01no526_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:36 2005
         (568 letters)



>mm_chr8_104177721_104178688
          Length = 968

 Score =  953 bits (493), Expect = 0.0
 Identities = 544/563 (96%), Gaps = 8/563 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggcttcatatttttgcaataaatgttctaatcacataagagtctttccaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggcttcatatttttgcaataaatgttctaatcacataagagtctttccaaac 264

                                                                       
Query: 65  actttcctaagattttaggattctttggagttttttcatgtccaagtgttttgactgctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actttcctaagattttaggattctttggagttttttcatgtccaagtgttttgactgctg 324

                                                                       
Query: 125 gcagagaatagaagacttgacccatttcatagatgtatggtgaaggtcaatcgtactgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagagaatagaagacttgacccatttcatagatgtatggtgaaggtcaatcgtactgtc 384

                                                                       
Query: 185 ctttttatagaactctttgtgatctcattccaaaataaattcttgtgctcttttagtata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttttatagaactctttgtgatctcattccaaaataaattcttgtgctcttttagtata 444

                                                                       
Query: 245 gcgtcatctaaatctcacacacattcacattctgtcgcagagaaaaaactcagaatcctg 304
           ||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 445 gcgtcatctaaatttcacacacattcacattctgtcgcagaggaaaa-ctcagaatcctg 503

                                                                       
Query: 305 gctggtctac-ttttttcaattttttttattagatattttcttcatttacatttcaaatg 363
           | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 gttggtctacattttttcaattttttt-attagatattttcttcatttacatttcaaatg 562

                                                                       
Query: 364 ctatcctgaaggtcccctgtaccctccccccccatgccatgctcccctacccacccactc 423
           ||||||||||||||||||||||||||||||    |||| |||||||||||||||||||||
Sbjct: 563 ctatcctgaaggtcccctgtaccctccccc----tgccctgctcccctacccacccactc 618

                                                                       
Query: 424 ccatttcttggctctgacattcccctctactggggcatataaagtttacaagaccaaggg 483
           ||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 619 ccacttcttggctcggacattcccctgtactggggcatataaagtttacaagaccaagag 678

                                                                       
Query: 484 gcctctcttcccaatgatggccgactatgccatcttctgctacatatgtagctagagaca 543
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 679 gcctctcttcccaatgatggcagactatgccatcttctgctacatatatagctagagaca 738

                                  
Query: 544 tgagctcc-gggggtactagtta 565
           |||||||| ||||||||| ||||
Sbjct: 739 tgagctccagggggtactggtta 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)