BAC Information

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BAC

Clone NameMSMg01-526M01
Chromosome8 (Build37)
Map Location 125,391,810 - 125,547,099
singlet/doubletdoublet
Overlap geneAnkrd11
Upstream geneSlc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15
Downstream geneSpg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526M01.T7 (MSMg01no526_m01.b1)MSMg01-526M01.TJ (MSMg01no526_m01.g1)
ACCAG596269AG596270
length733731
length of high quality
(start - end)		605 (37 - 641)240 (65 - 304)
definitionCHROMAT_FILE: MSMg01no526_m01.b1 PHD_FILE: MSMg01no526_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:46 2005CHROMAT_FILE: MSMg01no526_m01.g1 PHD_FILE: MSMg01no526_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,546,508 - 125,547,099)(125,391,810 - 125,392,047)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGT
CTGTAGCTCAGGCTGCCTGTGAGCTCTTCTGCCTCCCATGTTCTGGGTAG
TGGCATGCACTACCATACCCTGGCTCATACTGTTTCCTAACACTTTGTAG
ATGTTGATGGACGAGGCTTCTGCCTGCTACCCCCACTCTTCAAGCCTCAT
GTGTTTCAGCAGGTTACCACATCTTATATTCTAGTCTGTACAGGCCTATG
AATGTTTGTCACATGCTTTGTAATAGTGTAAGGTGAATGCCAGCATAATG
TGGAGCCAAGAGCATGACTTCTACTCCTCAGCTCCTGTAGTGACTCAGAC
AGACTTAAGGAGCAAGGAGAGGCCCGGGACACTACAGGGAATTCCAGACT
GTGGTAAAAGCATGCTAGGCTGGGGTGATGGTAGAGTACTTAAGTGTTTA
GCATGTGTAAGTTTCCAGATTCAGTTCCCAGTACCACAAAAAATAACGTA
AGAGCAAAAATCCACTTGCTATAAATCCTAGAGAATTTACTTCTGGTTTT
CTTTTTTTCTTTCTTTTTTGGTTGTTTTTCCCATTGAGACACACATGTAT
TTTGCACACAGTCTGGACATTCTGGAACATTCACAGCCACCCTTAATGCA
CACGGTGACTTGTTGGGTCATGTACACTCCACTCAAACACAGGTTTCTCA
CCCCCCGCCATCTTTTTCCACTTCTGGTTTTCN

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATGCAGGATGACAGCTAGGGAAGCAAGGACCATGT
GTTTTCTATTGTGTGAGAGGTGTCCCCTTGGGAAAGGCCATTAGCTTACA
GCTGGTGGGCTAGATGACACACTACAGTCTGAATGTCACTGGGCAACCCC
AAGGACAGAATTCAACAGAGCCCATGATTGGGCTCAAGGAAAACAAATGA
AAAACTGGGGTACATGCACCCTAGAAAACATTCTGCTCTTCTTACCACAA
AAAACAAGNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNAANAANNAA
AAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAA
AAATAAAAAAAAAAAAAAATAAAAAATAAATTACCAAANATATATAATTT
TTTTTATTATATATTATAAAAATTTTATTTATATTTATTTTTTTTAATAT
TATTATATTTTTTTTTTATTATTATATTTTTTTTTAAAATAATATTTTTT
TATATTTACTTTTCTTATTATGTCTTTTTTGNTTTGTTTATTGTCGTAGT
GAGTTTCTTCACCTATTTTCCTTATCATTTATATCAATTTATATTAATCC
TTTTTTTACCTATCTCATATTTTATACATAAACAACCCGTAAGAGCACAT
ACCATAACTATCATATGTTTTACTCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_m01.b1 MSMg01no526_m01.b1 CHROMAT_FILE:
MSMg01no526_m01.b1 PHD_FILE: MSMg01no526_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:46 2005
         (605 letters)



>mm_chr8_125546508_125547512
          Length = 1005

 Score = 1129 bits (584), Expect = 0.0
 Identities = 590/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggtctgtagctcaggctgcctgtgagctcttctgcctcccatgttctgggta 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggaattttggtctgtagctcaggctgcctgtgagctcttctgcctcccatgttctgggta 533

                                                                       
Query: 64  gtggcatgcactaccataccctggctcatactgtttcctaacactttgtagatgttgatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gtggcatgcactaccataccctggctcatactgtttcctaacactttgtagatgttgatg 473

                                                                       
Query: 124 gacgaggcttctgcctgctacccccactcttcaagcctcatgtgtttcagcaggttacca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gacgaggcttctgcctgctacccccactcttcaagcctcatgtgtttcagcaggttacca 413

                                                                       
Query: 184 catcttatattctagtctgtacaggcctatgaatgtttgtcacatgctttgtaatagtgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catcttatattctagtctgtacaggcctatgaatgtttgtcacatgctttgtaatagtgt 353

                                                                       
Query: 244 aaggtgaatgccagcataatgtggagccaagagcatgacttctactcctcagctcctgta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aaggtgaatgccagcataatgtggagccaagagcatgacttctactcctcagctcctgta 293

                                                                       
Query: 304 gtgactcagacagacttaaggagcaaggagaggcccgggacactacagggaattccagac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtgactcagacagacttaaggagcaaggagaggcccgggacactacagggaattccagac 233

                                                                       
Query: 364 tgtggtaaaagcatgctaggctggggtgatggtagagtacttaagtgtttagcatgtgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgtggtaaaagcatgctaggctggggtgatggtagagtacttaagtgtttagcatgtgta 173

                                                                       
Query: 424 agtttccagattcagttcccagtaccacaaaaaataacgtaagagcaaaaatccacttgc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agtttccagattcagttcccagtaccacaaaaaataacgtaagagcaaaaatccacttgc 113

                                                                       
Query: 484 tataaatcctagagaatttacttctggttttctttttttctttcttttttggttgttttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 112 tataaatcctagagaatttacttctggttttctttttttctttcttttttgtttgttttt 53

                                                               
Query: 544 cccattgagacacacatgtattttgcacacagtctggacattctggaacatt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  cccattgagacacacatgtattttgcacacagtctggacattctggaacatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_m01.g1 MSMg01no526_m01.g1 CHROMAT_FILE:
MSMg01no526_m01.g1 PHD_FILE: MSMg01no526_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:46 2005
         (240 letters)



>mm_chr8_125391610_125392249
          Length = 640

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcaggatgacagctagggaagcaaggaccatgtgttttctattgtgtgagaggtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcaggatgacagctagggaagcaaggaccatgtgttttctattgtgtgagaggtgtc 260

                                                                       
Query: 61  cccttgggaaaggccattagcttacagctggtgggctagatgacacactacagtctgaat 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttgggaaaggccactagcttacagctggtgggctagatgacacactacagtctgaat 320

                                                                       
Query: 121 gtcactgggcaaccccaaggacagaattcaacagagcccatgattgggctcaaggaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcactgggcaaccccaaggacagaattcaacagagcccatgattgggctcaaggaaaac 380

                                                                     
Query: 181 aaatgaaaaactggggtacatgcaccctagaaaacattctgctcttcttaccacaaaa 238
           ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aaatgaaaaactggggtgcacgcaccctagaaaacattctgctcttctcaccacaaaa 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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