BAC Information

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BAC

Clone NameMSMg01-526M08
Chromosome8 (Build37)
Map Location 33,432,780 - 33,574,876
singlet/doubletdoublet
Overlap genenone
Upstream gene7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneEG546052, LOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526M08.T7 (MSMg01no526_m08.b1)MSMg01-526M08.TJ (MSMg01no526_m08.g1)
ACCAG596283AG596284
length730732
length of high quality
(start - end)		577 (36 - 612)543 (67 - 609)
definitionCHROMAT_FILE: MSMg01no526_m08.b1 PHD_FILE: MSMg01no526_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:48 2005CHROMAT_FILE: MSMg01no526_m08.g1 PHD_FILE: MSMg01no526_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,432,780 - 33,433,352)(33,574,334 - 33,574,876)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGC
TATCCTTCAGCACCATGTCTGCCTGCATGCTGTCATGCTTCCTGCCATCA
TGATAATGGATTTAACCCCTGAAACTGTAACCTAACCCCATTAAAATGTT
TATAATAGTTACCATGGTTATGATGTTTCTTCACAGCAATAGAAACAAAA
AATGAGACATCTTGCCTACTTTCTTAGGTCCTATGACCTTAGGACATGTC
ATCCAATTGCTTAAGAGCTCTGTGACAATGCAGAAGTGGCTAAGGCACAC
TGAAGCATTCTCTCATGCTTTCTCTGATTTATATGTGATACGCTCCTATA
TACTTTTCCTACCCTAAATGTGAGTCTATGCAAGTGCTCTCATTTGAGAT
TAATGAAGAATTAATTTCTTAACTCGAGGGCTAGGAATTGCTGGCACTTA
GTTAGGTCTTTGATTTCTGCTTTGCTGAGGCCTTAAATCGAGAAGGAGCT
TTGGTGTGGTGAATGCAGGTGGGATGCCTGAGAGGCAGTGTTGAACACTT
GCTCCTTGAGATGTGTGTGCGCTCATTGGCTGTCACAATCGATTTGACTT
TGCTGCTTCATCTTCTAATCTCGGCAGCATTTTGCCTTGGGCAGAGCTGG
AGGGCTTAAGCTTAGAGAGAGAGAGAGAGAGAAAAAATGAACGTACTTAA
GAAAAAATTGGAATACATTGTTCTGGTTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTGTTTTCTTGATCATTGTAGTTAATGGTATAG
CTAACACATAAGAGTAGAGGGAATGCCATAAGACATAGAGTTTCCCAGGT
TTTATTTAATATTCAGAAAGCACAGATTTCAAAACTACAACAACAGGGGG
GACAGGGGGAAGAAAGCTTGATTTATAGTGCAGTAAGGAAAACCCTGGAA
TTTGCAAGGAAGGAAGCAAGCAAATTTGCTAACAACTGCACTGGAGCATG
ATGGACGGCCCCTGCTGTTGCTGGCACTGCATTTTGCTCTGTGCACAGCT
GTAGGGCAAAGCATCCTCAGATTTCCACTCAAACAAATGGTGGCAGTTTA
AATGTTGAAGCAAGATCACTGGTGACCAGCTGCTGGGATTTCAAACCCAG
ATCTGTCCCAGTCCTCCCAGATGCTCAGGAACAAGGGTGAGGCATTAAAT
CAGTGTCCTGACCCAGAGTGATGCCATTGATGCTGAGATTGCAGAAGTCC
CTGGAGAGGATGCTTTTAATCAGAGGAGCAAAGCCCTCTAAGTGAAATGC
TGGAGGTGGAATTGGTAGGCTTCACTTAACTGGGGTAAAATCAGAGACTC
TGAATCAAGAGAATTGCTGCAGAATGGTATTAACCTTTCTCTAGAAGACA
TGAGCTCTGAAGGTATGACCTTTGTACCATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_m08.b1 MSMg01no526_m08.b1 CHROMAT_FILE:
MSMg01no526_m08.b1 PHD_FILE: MSMg01no526_m08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:48 2005
         (577 letters)



>mm_chr8_33432576_33433552
          Length = 977

 Score = 1100 bits (569), Expect = 0.0
 Identities = 572/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagctatccttcagcaccatgtctgcctgcatgctgtcatgcttcctgccatc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagctacccttcagcaccatgtctgcctgcatgctgtcatgcttcctgccatc 264

                                                                       
Query: 65  atgataatggatttaacccctgaaactgtaacctaaccccattaaaatgtttataatagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgataatggatttaacccctgaaactgtaacctaaccccattaaaatgtttataatagt 324

                                                                       
Query: 125 taccatggttatgatgtttcttcacagcaatagaaacaaaaaatgagacatcttgcctac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taccatggttatgatgtttcttcacagcaatagaaacaaaaaatgagacatcttgcctac 384

                                                                       
Query: 185 tttcttaggtcctatgaccttaggacatgtcatccaattgcttaagagctctgtgacaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcttaggtcctatgaccttaggacatgtcatccaattgcttaagagctctgtgacaat 444

                                                                       
Query: 245 gcagaagtggctaaggcacactgaagcattctctcatgctttctctgatttatatgtgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagaagtggctaaggcacactgaagcattctctcatgctttctctgatttatatgtgat 504

                                                                       
Query: 305 acgctcctatatacttttcctaccctaaatgtgagtctatgcaagtgctctcatttgaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acgctcctatatacttttcctaccctaaatgtgagtctatgcaagtgctctcatttgaga 564

                                                                       
Query: 365 ttaatgaagaattaatttcttaactcgagggctaggaattgctggcacttagttaggtct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaatgaagaattaatttcttaactcgagggctaggaattgctggcacttagttaggtct 624

                                                                       
Query: 425 ttgatttctgctttgctgaggccttaaatcgagaaggagctttggtgtggtgaatgcagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgatttctgctttgctgaggccttaaatcgagaaggagctttggtgtggtgaatgcagg 684

                                                                       
Query: 485 tgggatgcctgagaggcagtgttgaacacttgctccttgagatgtgtgtgcgctcattgg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgggatgcctgagaggcagtgttgaacacttgctccttgagatgtgtgtgcgctcattgg 744

                                            
Query: 545 ctgtcacaatcgatttgactttgctgcttcatc 577
           |||||||||||||||||||||||||||||||||
Sbjct: 745 ctgtcacaatcgatttgactttgctgcttcatc 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_m08.g1 MSMg01no526_m08.g1 CHROMAT_FILE:
MSMg01no526_m08.g1 PHD_FILE: MSMg01no526_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:48 2005
         (543 letters)



>mm_chr8_33574134_33575076
          Length = 943

 Score = 1050 bits (543), Expect = 0.0
 Identities = 543/543 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgttttcttgatcattgtagttaatggtatagctaacacataagagtagagggaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctgttttcttgatcattgtagttaatggtatagctaacacataagagtagagggaatgc 684

                                                                       
Query: 61  cataagacatagagtttcccaggttttatttaatattcagaaagcacagatttcaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cataagacatagagtttcccaggttttatttaatattcagaaagcacagatttcaaaact 624

                                                                       
Query: 121 acaacaacaggggggacagggggaagaaagcttgatttatagtgcagtaaggaaaaccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acaacaacaggggggacagggggaagaaagcttgatttatagtgcagtaaggaaaaccct 564

                                                                       
Query: 181 ggaatttgcaaggaaggaagcaagcaaatttgctaacaactgcactggagcatgatggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaatttgcaaggaaggaagcaagcaaatttgctaacaactgcactggagcatgatggac 504

                                                                       
Query: 241 ggcccctgctgttgctggcactgcattttgctctgtgcacagctgtagggcaaagcatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggcccctgctgttgctggcactgcattttgctctgtgcacagctgtagggcaaagcatcc 444

                                                                       
Query: 301 tcagatttccactcaaacaaatggtggcagtttaaatgttgaagcaagatcactggtgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagatttccactcaaacaaatggtggcagtttaaatgttgaagcaagatcactggtgac 384

                                                                       
Query: 361 cagctgctgggatttcaaacccagatctgtcccagtcctcccagatgctcaggaacaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagctgctgggatttcaaacccagatctgtcccagtcctcccagatgctcaggaacaagg 324

                                                                       
Query: 421 gtgaggcattaaatcagtgtcctgacccagagtgatgccattgatgctgagattgcagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtgaggcattaaatcagtgtcctgacccagagtgatgccattgatgctgagattgcagaa 264

                                                                       
Query: 481 gtccctggagaggatgcttttaatcagaggagcaaagccctctaagtgaaatgctggagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtccctggagaggatgcttttaatcagaggagcaaagccctctaagtgaaatgctggagg 204

              
Query: 541 tgg 543
           |||
Sbjct: 203 tgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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