BAC Information

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BAC

Clone NameMSMg01-526P05
Chromosome8 (Build37)
Map Location 113,620,483 - 113,795,315
singlet/doubletdoublet
Overlap gene4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3
Upstream geneGm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl
Downstream geneLOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526P05.T7 (MSMg01no526_p05.b1)MSMg01-526P05.TJ (MSMg01no526_p05.g1)
ACCAG596419AG596420
length744741
length of high quality
(start - end)		592 (35 - 626)629 (67 - 695)
definitionCHROMAT_FILE: MSMg01no526_p05.b1 PHD_FILE: MSMg01no526_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:02 2005CHROMAT_FILE: MSMg01no526_p05.g1 PHD_FILE: MSMg01no526_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(113,620,483 - 113,621,071)(113,794,687 - 113,795,315)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGTT
ATGTTTCTTTCCTGTTGCTATTCTCTTTTCTAGGTAGGGAAAGAGCTTCT
GGTACTGCTTTACAGCTGTTTAGCCTTTGCTTACCTGGATTTCTTTGAAG
CCCATGCTTTTAATCCCAGCACTGGGGGAGGCAGAGACAGGTGGATTTCT
ATGAAGTCTAAGCAACCTTGGTCTACATAGCAAGTTCTAGGCCATTTGCT
ACAAAGTGACACCCTGTCTAGAAAGAAAGGAAGAAAGAGAGAAAGGGAAA
AAAGAAAGCAGTAGTAGTATTATGATAAGTGGCTCTGATGCTAGATTTGT
AGTTTTGTCTTTGATTATAGAATAATCATTTTACATAATATACTTTATAC
ATAAGTTTCCTAAAGTACAGAACAGAAATTATGTCCACCCTATAGGGTTG
TGCTTAGATTAGTTGATACTTAGGAAGTATCTTGCACACTGTAACCACTA
ACAGAGACCCAAATTCAGGACCTCATCCTTGCACAGCTGCTGCTTTAACC
ACTGAGCCACCTTCCTCAGCCCTATGTATGTTTATTGAGATAGGGTCTCA
TTTAACCTAAACTTTTTGGGGTTTTTTGTTTTTGATTTTGTGTTTGTTTG
TTTTCTGAGACAGGGATTCTCGGTATAGACCTGGCTGTCCTGGAACTCAC
TCTGTATACCAGCCTGGCCTCCAACTCATAAATCCACCTGCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAACTAACTAAAGCAGATGGCCACAATAAAAGCTG
TGCGTGTCAGGTTAGTCTGGGGCAGGGTTAGGATATGACTTGCCTTGAAG
GACATTTAAGGCTGACTGGGGATTTGCTACCACAGAAGCTAAGCTAAATA
CCAAGCCTTGCCGTGGCAATTTGCATTTCCACAATGAATTTGGATTGGGG
TGGGGGAGTGCCAGGACCTCAACCTGGTTAAGGTTTTTGCTCTACCACTG
AGCTGTATTAGAAGCCCAAATCTGTGATTTGGAAGCAGATTCACAGTATG
GACCGATTGACCAAAGACAACCTTATTGCAAGAAACTTCATCTCTAAACC
TGGGCTCTAGTCTTAGCACCAGCAAGATCTGTTTTGTTTTAAAATCTTGT
CATAGGGCATTGGGATTTCTGAATATCTGCTGTCCTGTGTGTGTTTCAAT
GTTTTAATGTTAACAAAATAAAGAATTTGTAAGGTGTCTTCCCAGTGTCT
TCCGCCTGTTTACTGGATGCAGGAATACCCCTGCCTCTTGGGAAAGGTAG
GGCAGAATCCTACCCTAGGAGATTCTCCATCGCATCTGGTACTGGATATG
AGTTACACAGGATGGTCCCTAGAGCTGAGTAAATGCTTACTTAATTAGCC
TAGCCATCTTTAGAGTCTCAAGTACTTTAACTCCCTACGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_p05.b1 MSMg01no526_p05.b1 CHROMAT_FILE:
MSMg01no526_p05.b1 PHD_FILE: MSMg01no526_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:02 2005
         (592 letters)



>mm_chr8_113620280_113621271
          Length = 992

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgttatgtttctttcctgttgctattctcttttctaggtagggaaagagct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgttatgtttctttcctgttgctattctcttttctaggtagggaaagagct 263

                                                                       
Query: 64  tctggtactgctttacagctgtttagcctttgcttacctggatttctttgaagcccatgc 123
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 tctggtactgctttacagctgtttggcctttgcttacctggatttctttgaagcccatgc 323

                                                                       
Query: 124 ttttaatcccagcactgggggaggcagagacaggtggatttctatgaagtctaagcaacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttttaatcccagcactgggggaggcagagacaggtggatttctatgaagtctaagcaacc 383

                                                                       
Query: 184 ttggtctacatagcaagttctaggccatttgctacaaagtgacaccctgtctagaaagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttggtctacatagcaagttctaggccatttgctacaaagtgacaccctgtctagaaagaa 443

                                                                       
Query: 244 aggaagaaagagagaaagggaaaaaagaaagcagtagtagtattatgataagtggctctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggaagaaagagagaaagggaaaaaagaaagcagtagtagtattatgataagtggctctg 503

                                                                       
Query: 304 atgctagatttgtagttttgtctttgattatagaataatcattttacataatatacttta 363
           |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 atgctagatttgcagttttgtctttgattatagaataataattttacataatatacttta 563

                                                                       
Query: 364 tacataagtttcctaaagtacagaacagaaattatgtccaccctatagggttgtgcttag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacataagtttcctaaagtacagaacagaaattatgtccaccctatagggttgtgcttag 623

                                                                       
Query: 424 attagttgatacttaggaagtatcttgcacactgtaaccactaacagagacccaaattca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 attagttgatacttaggaagtatcttgcacactgtaaccactaacagagacccaaattca 683

                                                                       
Query: 484 ggacctcatccttgcacagctgctgctttaaccactgagccaccttcctcagccctatgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggacctcatccttgcacagctgctgctttaaccactgagccaccttcctcagccctatgt 743

                                                            
Query: 544 atgtttattgagatagggtctcatttaacctaaactttttggggttttt 592
           ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 744 atgtttattgagatagggtctcatttagcctaaactttttggggttttt 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_p05.g1 MSMg01no526_p05.g1 CHROMAT_FILE:
MSMg01no526_p05.g1 PHD_FILE: MSMg01no526_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:02 2005
         (629 letters)



>mm_chr8_113794487_113795515
          Length = 1029

 Score = 1208 bits (625), Expect = 0.0
 Identities = 628/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactaactaaagcagatggccacaataaaagctgtgcgtgtcaggttagtctggggcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aactaactaaagcagatggccacaataaaagctgtgcgtgtcaggttagtctggggcagg 770

                                                                       
Query: 61  gttaggatatgacttgccttgaaggacatttaaggctgactggggatttgctaccacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gttaggatatgacttgccttgaaggacatttaaggctgactggggatttgctaccacaga 710

                                                                       
Query: 121 agctaagctaaataccaagccttgccgtggcaatttgcatttccacaatgaatttggatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 709 agctaagctaaataccaagccttgccgtggcaatttgcatttccacaataaatttggatt 650

                                                                       
Query: 181 ggggtgggggagtgccaggacctcaacctggttaaggtttttgctctaccactgagctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggggtgggggagtgccaggacctcaacctggttaaggtttttgctctaccactgagctgt 590

                                                                       
Query: 241 attagaagcccaaatctgtgatttggaagcagattcacagtatggaccgattgaccaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 attagaagcccaaatctgtgatttggaagcagattcacagtatggaccgattgaccaaag 530

                                                                       
Query: 301 acaaccttattgcaagaaacttcatctctaaacctgggctctagtcttagcaccagcaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acaaccttattgcaagaaacttcatctctaaacctgggctctagtcttagcaccagcaag 470

                                                                       
Query: 361 atctgttttgttttaaaatcttgtcatagggcattgggatttctgaatatctgctgtcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atctgttttgttttaaaatcttgtcatagggcattgggatttctgaatatctgctgtcct 410

                                                                       
Query: 421 gtgtgtgtttcaatgttttaatgttaacaaaataaagaatttgtaaggtgtcttcccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gtgtgtgtttcaatgttttaatgttaacaaaataaagaatttgtaaggtgtcttcccagt 350

                                                                       
Query: 481 gtcttccgcctgtttactggatgcaggaatacccctgcctcttgggaaaggtagggcaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtcttccgcctgtttactggatgcaggaatacccctgcctcttgggaaaggtagggcaga 290

                                                                       
Query: 541 atcctaccctaggagattctccatcgcatctggtactggatatgagttacacaggatggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atcctaccctaggagattctccatcgcatctggtactggatatgagttacacaggatggt 230

                                        
Query: 601 ccctagagctgagtaaatgcttacttaat 629
           |||||||||||||||||||||||||||||
Sbjct: 229 ccctagagctgagtaaatgcttacttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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