BAC Information

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BAC

Clone NameMSMg01-527E08
Chromosome8 (Build37)
Map Location 112,873,714 - 113,036,508
singlet/doubletdoublet
Overlap geneHydin, LOC672398
Upstream geneLOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527E08.T7 (MSMg01no527_e08.b1)MSMg01-527E08.TJ (MSMg01no527_e08.g1)
ACCAG596664AG596665
length741670
length of high quality
(start - end)		691 (51 - 741)228 (83 - 310)
definitionCHROMAT_FILE: MSMg01no527_e08.b1 PHD_FILE: MSMg01no527_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:27 2005CHROMAT_FILE: MSMg01no527_e08.g1 PHD_FILE: MSMg01no527_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,873,714 - 112,874,400)(113,036,281 - 113,036,508)
sequence
GGGAGGGTGGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACATTCTCTCTTTTATTCTTTGGCCAGTTGTAAGTCTCT
GTTAATTACCATCTACTAAAAAGAAGCTTCTCTGAGGAGGGATGAGAGGT
GCACAGATCAATAGGTAGAGCTCCAATTAAGTCATTAGAAGTCAGTTTAA
TACTATGACCACGTAGAGTAATAGTAGCAGGTTCCTGCTAGGGTCTATGA
CCTACCCATCCATAATTTCTCTCTACATTCGTATACTCTCCATCAGATGC
ATAACTAGTAGAGATTTCTCTGTTCTGTGAGGTGCCTCTTCACTCAAATG
ATGGTGTCTTTGCTGTAGAGAAGCTTTGTACTTTCATGAGACCCCGTTTA
TTAATTTCTCTTCTTTACACCTATGCTCCTGTGGTCCTGTTCAGGAAGCC
CTTTCCTGTACCAGTGAGGAAAATCCAGTCCCTACCCTGCCCTCTACCAG
ATCCAGGGCATCAGGCTTTGTAGACTTTTCAAACTGTGTTTTCAATTTTG
CAAATTTGTTTCCGGCATCAATGAAGAACATATCATTTCTTCCTTTGAGT
CACGATAGATTTAAACCAAACGTAGACGTGCTATTGTTTAAAAGCAAGGA
GAGCATTATGAAAGGACCCAGAAAGTGAAAGACGCTCTGTCTCTCTTACT
CCTGGTGGCAAACTCTTCAGCTGAAATTAGGAGAACTGGAG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGCCCCAGAATAT
AAAGTTTAAAATCGTCACAAGTTACAGGGATTGAGAGAGACAGAGGGTGA
CAGGAGTTGAAGCTAGCTTTATAATCACCGGAGCAGGAGAACTCTACTGT
CCACATCTTTAATTCTCAGGCTTTCAGAATGATGTGGAGACCATTCTGTA
CACATCAGCTGGAGCCTGCTTCCACCCTCACTGCCTCGCCAACATTCCCA
GGGTGCCTGACCCCCTGTCAGGCCTGTCACCCACCTCACTGGCTTGGGCC
TTTGGCCCCNNNNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTNNNNNNNNNNNTNTTNTTNNTTTTTTTTTTTTTTTTNTTT
TTTNTCTTTTTTTCTTTTTTTTTCTCTCTTCTCCCTTTCCTTTTTTTTCC
CTCTTCCCTCCCCCTTTTTTTTTCCTCTTCCTTTTTTCTCTTTCCCTTTT
CCCTTTCTTCTCTCTTCCTCTCTTTTTTTCCTCCTCTTCTTTTTTTTTTC
TCCCTCCCTTCTTTCTTTTTTTTTCTTTTTTTCTCCTCTTCTTTCTCCTC
TTCTTTCCCTCTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_e08.b1 MSMg01no527_e08.b1 CHROMAT_FILE:
MSMg01no527_e08.b1 PHD_FILE: MSMg01no527_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:27 2005
         (691 letters)



>mm_chr8_112873510_112874600
          Length = 1091

 Score = 1282 bits (663), Expect = 0.0
 Identities = 681/687 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacattctctcttttattctttggccagttgtaagtctctgttaattaccatct 64
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacagcctctcttttattctttggccagttgtaagtctctgttaattaccatct 264

                                                                       
Query: 65  actaaaaagaagcttctctgaggagggatgagaggtgcacagatcaataggtagagctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actaaaaagaagcttctctgaggagggatgagaggtgcacagatcaataggtagagctcc 324

                                                                       
Query: 125 aattaagtcattagaagtcagtttaatactatgaccacgtagagtaatagtagcaggttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattaagtcattagaagtcagtttaatactatgaccacgtagagtaatagtagcaggttc 384

                                                                       
Query: 185 ctgctagggtctatgacctacccatccataatttctctctacattcgtatactctccatc 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 ctgctagggtctatgacctacccatccatagtttctctctacattcgtatactctccatc 444

                                                                       
Query: 245 agatgcataactagtagagatttctctgttctgtgaggtgcctcttcactcaaatgatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatgcataactagtagagatttctctgttctgtgaggtgcctcttcactcaaatgatgg 504

                                                                       
Query: 305 tgtctttgctgtagagaagctttgtactttcatgagaccccgtttattaatttctcttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtctttgctgtagagaagctttgtactttcatgagaccccgtttattaatttctcttct 564

                                                                       
Query: 365 ttacacctatgctcctgtggtcctgttcaggaagccctttcctgtaccagtgaggaaaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttacacctatgctcctgtggtcctgttcaggaagccctttcctgtaccagtgaggaaaat 624

                                                                       
Query: 425 ccagtccctaccctgccctctaccagatccagggcatcaggctttgtagacttttcaaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagtccctaccctgccctctaccagatccagggcatcaggctttgtagacttttcaaac 684

                                                                       
Query: 485 tgtgttttcaattttgcaaatttgtttccggcatcaatgaagaacatatcatttcttcct 544
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 tgtgttttcaattttgcaaatttgtttccggcatcaatgaaggacatatcatttcttcct 744

                                                                       
Query: 545 ttgagtcacgatagatttaaaccaaacgtagacgtgctattgtttaaaagcaaggagagc 604
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgagtcacgatagacttaaaccaaacgtagacgtgctattgtttaaaagcaaggagagc 804

                                                                       
Query: 605 attatgaaaggacccagaaagtgaaagacgctctgtctctcttactcctggtggcaaact 664
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 805 attatgaaaggacccagaaagtgaaagacactctgtctctcttactcctggtggcaaact 864

                                      
Query: 665 cttcagctgaaattaggagaactggag 691
           |||||||||||||||||||||||||||
Sbjct: 865 cttcagctgaaattaggagaactggag 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no527_e08.g1 MSMg01no527_e08.g1 CHROMAT_FILE:
MSMg01no527_e08.g1 PHD_FILE: MSMg01no527_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:27 2005
         (228 letters)



>mm_chr8_113036081_113036708
          Length = 628

 Score =  433 bits (224), Expect = e-126
 Identities = 227/228 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagagccccagaatataaagtttaaaatcgtcacaagttacagggattgagagagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 caaagagccccagaatataaagtttaaaatcgtcacaagttacagggattgagagagaca 369

                                                                       
Query: 61  gagggtgacaggagttgaagctagctttataatcaccggagcaggagaactctactgtcc 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 368 gagggtgacaggagttgaagctagctttataatcactggagcaggagaactctactgtcc 309

                                                                       
Query: 121 acatctttaattctcaggctttcagaatgatgtggagaccattctgtacacatcagctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 acatctttaattctcaggctttcagaatgatgtggagaccattctgtacacatcagctgg 249

                                                           
Query: 181 agcctgcttccaccctcactgcctcgccaacattcccagggtgcctga 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 agcctgcttccaccctcactgcctcgccaacattcccagggtgcctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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