NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGTTCAATGTTCTCCTGTTATACCACAATTGGACCATGT
GCCTAGTAATGTTTAGCAGAAATTATGGTGTATCACTTTGCAGGAGGAAT
TAAAATATCAGAGCTTATACATGACTGTCTATATATGCTCTCTCTTCCTC
CCCCTTTCTCTCTTCATTCAGTCTTGCAAATAGCTTCATGCCATCAACAG
CACCATCCAGGGAAATGCCTTCCTGGTGAGGAATTGAACAGCAAAATTGT
ACCCTCAGGTGGCACTAAAATTTCAACTCAGCTAAGTCACTCTCAAATTA
TTGGGTTGGCTGTTTTGAGCCACTGCCTTAAGACAACTCTTTTGTGGTAA
AAGATGTTTAATCTGTTAGCTATTATATTATACTGAAACATGGAAATTAT
GATGCTAAACACATTCACATACTTTAAACATACTATTCAGACAGTGTTTT
TTATCTACATGTTCTTGGCATGCATCTGGGGTGGGTAGCTATGGCTCAAG
TGGTGACTATGGGAACAAGGATACTCGTATCTAATTGTTCCATCACTTGT
GGCTTTAGCACAGCTCTATGACAACAATGGAAGACCAACAGATGAAAGAG
AATAGGGAAATGTATTTTCAGGGGCCAGCTTTGGAAGTAGCAAGCATCTG
TACTGCCACAATCCATTGAGCACAGTCAGTAGATCCAAATGAATTGCAAA
TTAACAG

NCGTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAGATGCCAGTATGTAGT
ACTTCTATGAGGCAGCAGTTGTAAAAATTGCTTTTGTTTTGAACTCCTTT
GACTTAAGTGGAGTTGGAGTACTGAATATATTTTATCTCACTGACCCATT
TTGATAATATGATGGCTTAAAAAATTTGTCCTGGATATACAGTCTTTGTA
ACCTGAAATGTTTTGCTTTTTCTTCTGTGTGATACTATATAAAATATTTC
TATTGTGGTGACATAATATGCAAATTGTATTGTTATGCAGAAAATGAAAT
AGTATTTAAAATAATTTAAAAATCCTCAACAATGTGGCTTTTTCACCCAT
GACAGAATGCATAGGGATAAATGTAAAAACTTGTAAGAAGCTGATGTAGT
TTGCTATATTTGATAAATGACATTTTTCTAATAAAGTGCTGCTATAGAGA
GAAATTATGGCTCTTTCCTACAGTCATCACCAATGTTGATCAAAAACGGA
AATATAGTCATGATGAGTACTTTCTCCCTGCTAGTTTCTCTGTTATGATG
TTAGACCTTAAGAACAAATGCTTTCATAATTTAATGAACAAAGATTAAAA
AAAGGAATTTCTTTTTTCCCCCAAAGATTCATTTATTTATTATATATAAG
TACACTGTTGCTATCTTCAGACACACCAGAAGAGGGCGTCAGACATCN

Query= MSMg01no528_k04.b1 MSMg01no528_k04.b1 CHROMAT_FILE:
MSMg01no528_k04.b1 PHD_FILE: MSMg01no528_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:17 2005
         (707 letters)



>mm_chr8_60839724_60840830
          Length = 1107

 Score = 1344 bits (695), Expect = 0.0
 Identities = 701/703 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagttcaatgttctcctgttataccacaattggaccatgtgcctagtaatgttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gaattctagttcaatgttctcctgttataccacaattggaccatgtgcctagtaatgttt 848

                                                                       
Query: 65  agcagaaattatggtgtatcactttgcaggaggaattaaaatatcagagcttatacatga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 agcagaaattatggtgtatcactttgcaggaggaattaaaatatcagagcttatacatga 788

                                                                       
Query: 125 ctgtctatatatgctctctcttcctccccctttctctcttcattcagtcttgcaaatagc 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 787 ctgtctatatatgctctctcttccttcccctttctctcttcattcagtcttgcaaatagc 728

                                                                       
Query: 185 ttcatgccatcaacagcaccatccagggaaatgccttcctggtgaggaattgaacagcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttcatgccatcaacagcaccatccagggaaatgccttcctggtgaggaattgaacagcaa 668

                                                                       
Query: 245 aattgtaccctcaggtggcactaaaatttcaactcagctaagtcactctcaaattattgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aattgtaccctcaggtggcactaaaatttcaactcagctaagtcactctcaaattattgg 608

                                                                       
Query: 305 gttggctgttttgagccactgccttaagacaactcttttgtggtaaaagatgtttaatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gttggctgttttgagccactgccttaagacaactcttttgtggtaaaagatgtttaatct 548

                                                                       
Query: 365 gttagctattatattatactgaaacatggaaattatgatgctaaacacattcacatactt 424
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 547 gttagctattatattatactgaaacatggaaaatatgatgctaaacacattcacatactt 488

                                                                       
Query: 425 taaacatactattcagacagtgttttttatctacatgttcttggcatgcatctggggtgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taaacatactattcagacagtgttttttatctacatgttcttggcatgcatctggggtgg 428

                                                                       
Query: 485 gtagctatggctcaagtggtgactatgggaacaaggatactcgtatctaattgttccatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtagctatggctcaagtggtgactatgggaacaaggatactcgtatctaattgttccatc 368

                                                                       
Query: 545 acttgtggctttagcacagctctatgacaacaatggaagaccaacagatgaaagagaata 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acttgtggctttagcacagctctatgacaacaatggaagaccaacagatgaaagagaata 308

                                                                       
Query: 605 gggaaatgtattttcaggggccagctttggaagtagcaagcatctgtactgccacaatcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gggaaatgtattttcaggggccagctttggaagtagcaagcatctgtactgccacaatcc 248

                                                      
Query: 665 attgagcacagtcagtagatccaaatgaattgcaaattaacag 707
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attgagcacagtcagtagatccaaatgaattgcaaattaacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space:   764609
Effective search space used:   764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no528_k04.g1 MSMg01no528_k04.g1 CHROMAT_FILE:
MSMg01no528_k04.g1 PHD_FILE: MSMg01no528_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:17 2005
         (594 letters)



>mm_chr8_60706369_60707362
          Length = 994

 Score = 1133 bits (586), Expect = 0.0
 Identities = 592/594 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaagatgccagtatgtagtacttctatgaggcagcagttgtaaaaattgcttttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 tagaagatgccagtatgtagtacttctatgaggcagcagttgtaaaatttgcttttgttt 260

                                                                       
Query: 61  tgaactcctttgacttaagtggagttggagtactgaatatattttatctcactgacccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaactcctttgacttaagtggagttggagtactgaatatattttatctcactgacccat 320

                                                                       
Query: 121 tttgataatatgatggcttaaaaaatttgtcctggatatacagtctttgtaacctgaaat 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tttgataatatgatggcttaaaaaatttgtcctggatagacagtctttgtaacctgaaat 380

                                                                       
Query: 181 gttttgctttttcttctgtgtgatactatataaaatatttctattgtggtgacataatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttttgctttttcttctgtgtgatactatataaaatatttctattgtggtgacataatat 440

                                                                       
Query: 241 gcaaattgtattgttatgcagaaaatgaaatagtatttaaaataatttaaaaatcctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaattgtattgttatgcagaaaatgaaatagtatttaaaataatttaaaaatcctcaa 500

                                                                       
Query: 301 caatgtggctttttcacccatgacagaatgcatagggataaatgtaaaaacttgtaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatgtggctttttcacccatgacagaatgcatagggataaatgtaaaaacttgtaagaa 560

                                                                       
Query: 361 gctgatgtagtttgctatatttgataaatgacatttttctaataaagtgctgctatagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgatgtagtttgctatatttgataaatgacatttttctaataaagtgctgctatagag 620

                                                                       
Query: 421 agaaattatggctctttcctacagtcatcaccaatgttgatcaaaaacggaaatatagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaattatggctctttcctacagtcatcaccaatgttgatcaaaaacggaaatatagtc 680

                                                                       
Query: 481 atgatgagtactttctccctgctagtttctctgttatgatgttagaccttaagaacaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgatgagtactttctccctgctagtttctctgttatgatgttagaccttaagaacaaat 740

                                                                 
Query: 541 gctttcataatttaatgaacaaagattaaaaaaaggaatttcttttttccccca 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctttcataatttaatgaacaaagattaaaaaaaggaatttcttttttccccca 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)