Query= MSMg01no528_l08.b1 MSMg01no528_l08.b1 CHROMAT_FILE:
MSMg01no528_l08.b1 PHD_FILE: MSMg01no528_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:23 2005
(618 letters)
>mm_chr8_93139717_93140733
Length = 1017
Score = 1180 bits (610), Expect = 0.0
Identities = 613/614 (99%), Gaps = 1/614 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgattgggtttgtctctctagcaccaagacaagctacttacatttttcgggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 gaattctctgattgggtttgtctctctagcaccaagacaagctacttacatttttcgggg 758
Query: 65 gattaaattaagagtttcccattcacaaatatgtaccacatgaccttttataaaccaagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gattaaattaagagtttcccattcacaaatatgtaccacatgaccttttataaaccaagc 698
Query: 125 aagttctgcacctttggaaacatttgtaggaaggcagaaaatttaggctggtgtgtgacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aagttctgcacctttggaaacatttgtaggaaggcagaaaatttaggctggtgtgtgacc 638
Query: 185 taattgtttgagttggagatggcagctgttatcgacttgagctgttttagctgaaacaat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 taattgtttgagttggagatggcagctgttatcgacttgagctgttttagctgaaacaat 578
Query: 245 tacttgcataacctcattctaatccttcaggaaccctaggcagcagttacccccacaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tacttgcataacctcattctaatccttcaggaaccctaggcagcagttacccccacaatt 518
Query: 305 atctgggtgatcatcaggagcagctttacaggagggatcactggaggtcagtgaggagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atctgggtgatcatcaggagcagctttacaggagggatcactggaggtcagtgaggagaa 458
Query: 365 tgtcagagtacgcatcttcatagtgtagctgtgaaactcatggtattctgcttctcatag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgtcagagtacgcatcttcatagtgtagctgtgaaactcatggtattctgcttctcatag 398
Query: 425 cacatgatcaaagccagtgtcaattccatactaagtacaaggccagtcaactctattttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 397 cacatgatcaaagccagtgtcaattccatactaagtacaaggccagtcaactcta-tttt 339
Query: 485 ttttttttaaagaaagaagagttattggtgtctcttgcaggggctgaggttatggaagta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttttttttaaagaaagaagagttattggtgtctcttgcaggggctgaggttatggaagta 279
Query: 545 cccaggacaataaaatccgactatgtgatgaagacagggctaggaagagaggctgtcaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cccaggacaataaaatccgactatgtgatgaagacagggctaggaagagaggctgtcaca 219
Query: 605 tgtgatgcttaaga 618
||||||||||||||
Sbjct: 218 tgtgatgcttaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_l08.g1 MSMg01no528_l08.g1 CHROMAT_FILE:
MSMg01no528_l08.g1 PHD_FILE: MSMg01no528_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:23 2005
(623 letters)
>mm_chr8_92977152_92978174
Length = 1023
Score = 1069 bits (553), Expect = 0.0
Identities = 589/623 (94%), Gaps = 34/623 (5%)
Strand = Plus / Plus
Query: 1 ctaatggctgatcattttcagaggcacagtacctacttgcacttcaaatcacacccagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatggctgatcattttcagaggcacagtacctacttgcacttcaaatcacacccagct 260
Query: 61 ctcttctccttaagcctatctcaagtgtgcatgccacatcctctcttactttgctcctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttctccttaagcctatctcaagtgtgcatgccacatcctctcttactttgctcctca 320
Query: 121 gactctgctccaatccctgctaggaaggcaggagagcatttatattctgacagagtaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactctgctccaatccctgctaggaaggcaggagagcatttatattctgacagagtaggg 380
Query: 181 aggtgggaaattgcatgatatcaaccaactttgagcatcaagaggaaaataaaaacaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgggaaattgcatgatatcaaccaactttgagcatcaagaggaaaataaaaacaatg 440
Query: 241 gccccgaattgcggattttaaaatgcagggatacagttctgttctgaaaaaaggagggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccccgaattgcggattttaaaatgcagggatacagttctgttctgaaaaaaggagggca 500
Query: 301 tcttttctataaaaactgggtagaggaatatttcacatggaaagcttccctagagcaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttttctataaaaactgggtagaggaatatttcacatggaaagcttccctagagcaaat 560
Query: 361 tggaagtcagcacaatgcccgggcatgcacttgtttaagcctggaagaatgtatgcccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaagtcagcacaatgcccgggcatgcacttgtttaagcctggaagaatgtatgcccaa 620
Query: 421 atttgcacacacacacacacacacacacacacacacacacacacacacacacacacacac 480
||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttgcacacacacacacacacacacacacacacacac---------------------- 658
Query: 481 acacacacacactccattctttatacatacatatttacacacaatatacataaagaatga 540
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ------------tccattctttatacatacatatttacacacaatatacataaagaatga 706
Query: 541 ccttctcccgctccaccctcctgctgcctgcaacggtaacatttactgaaggttttatta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccttctcccgctccaccctcctgctgcctgcaacggtaacatttactgaaggttttatta 766
Query: 601 caaaagccacaaaatgaaattct 623
|||||||||||||||||||||||
Sbjct: 767 caaaagccacaaaatgaaattct 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
