BAC Information

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BAC

Clone NameMSMg01-529L03
Chromosome8 (Build37)
Map Location 123,768,708 - 123,769,187
singlet/doubletsinglet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-529L03.T7 (MSMg01no529_l03.b1)MSMg01-529L03.TJ (MSMg01no529_l03.g1)
ACCAG598515AG598516
length751719
length of high quality
(start - end)
629 (50 - 678)---
definitionCHROMAT_FILE: MSMg01no529_l03.b1 PHD_FILE: MSMg01no529_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:46 2005CHROMAT_FILE: MSMg01no529_l03.g1 PHD_FILE: MSMg01no529_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:05:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTGATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCAGCCATCTGTTCCTCCTTCAAGGTAGGTGTGGGGGGTC
CCATCATGCTAAGCCCCTGAGCAGCAGGAGGCAGGAGGCAGGAGGCAGGA
GGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAG
GCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGG
CAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGC
AGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCA
GGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGAGGCCC
ACACCTCTGCTTCTTTGGCTTATAACATCAGATACTACCTGGGACCTACC
TGGTTCCTTTGCTGCCTAATACTGCAGCCTCTAGCCTGGAAATGTCACTG
TCACCCTGGGGAAATATGACTTACTCTTGCCCTGCAGGGAAGTAGACTAA
ATAGTGGAAATCTCAAGGGAGTAAAAGCTTTGAGGGGGAGGGTTATCTAG
CTACATTGATGAAGCCAGAGATTCCTATCCCTGAATAAAACAGTGGGGAG
GTTCCACTGACCTCCGCCTTGCTGAGCCATCAACAATACTATTACACGCA
TGCTTGGATTAATTTCTGATGTCAAATCCTCTTCACTAAATTTATGTCAG
A
CATCGTGGTAGCCGCGGCGCTGCCTCCGCTGAGTCGCCCGGGCCGTGCGA
GGCGGGTGCCGGGGGGCCAACCNNNCTACCTGANNAAAAAATACCCTCCC
CCCNCTGACCCAAAAGAAAAAACAAATCAATTTTNNNNNCNCNNNNNNNN
CNNCCNNNCCCCCCNCNNCCNNCCCCCCCCNCCCCCCNCCNCCCCCCCCN
CCCCCCCCCCCCCCCCCNCNNNNCCCCNNNNNTTTTTTTTGTGTTTTTTT
TCTGTGGGTGGTTTTTTCCCCNNNNNNNNCCACCCACCCCCCTNNNNTTT
GTTTTTTTTTTCCCCCACCACCCCCCCCCCCCCCTNNNNNNTANNNCCAC
CNNNNCCCCCCCCCCNCNNCAAAANNNNAACCCCCCCCCCCCCCCCCTCC
CTACCCCCCCCCCCCCCCCACACCCCCNTTTACCCCCCCCCCCCCTTTNT
TTTTNNNNTTTTNNTTNNNNNNANNNNNNNNNNACCCCCCCCCCCCCCCC
CCCCCCCCCTCCCCCCACCCACCTCCCCCCCCCCTCCCCCCCCCCCATCC
CCTAATTCTCCAAATTCACTCCCTCCCCCTCTTTNNNATACCCCTTCCTA
CCCCCCCCCCCCCCCCCCCCTTTACCATCCCCCTCCTTCCCCCCTTCACC
CCTTCCCCCTCCCCCCCCCANCCACCCCCCCNTANCCCCCCNCCCCCCCC
CTTTCCTGGGGTTGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no529_l03.b1 MSMg01no529_l03.b1 CHROMAT_FILE:
MSMg01no529_l03.b1 PHD_FILE: MSMg01no529_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:05:46 2005
         (629 letters)



>mm_chr8_123768159_123769187
          Length = 1029

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Minus

                                                                        
Query: 150  aggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggc 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 aggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggc 970

                                                                        
Query: 210  aggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcagga 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  aggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcagga 910

                                                                        
Query: 270  ggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggca 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  ggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggcaggaggca 850

                                                                        
Query: 330  ggaggcaggaggcaggaggcccacacctctgcttctttggcttataacatcagatactac 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 849  ggaggcaggaggcaggaggcccacacctctgcttctttggcttataacatcagataccac 790

                                                                        
Query: 390  ctgggacctacctggttcctttgctgcctaatactgcagcctctagcctggaaatgtcac 449
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 789  ctgggacctacctggttcctttgctgcctaatactgcagcctcaagcctggaaatgtcac 730

                                                                        
Query: 450  tgtcaccctggggaaatatgacttactcttgccctgcagggaagtagactaaatagtgga 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  tgtcaccctggggaaatatgacttactcttgccctgcagggaagtagactaaatagtgga 670

                                                                        
Query: 510  aatctcaagggagtaaaagctttgagggggagggttatctagctacattgatgaagccag 569
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 669  aatctcaagggagtaaaagctttgagggggaaggttatctagctacattgatgaagccag 610

                                                                        
Query: 570  agattcctatccctgaataaaacagtggggaggttccactgacctccgccttgctgagcc 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  agattcctatccctgaataaaacagtggggaggttccactgacctccgccttgctgagcc 550


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 354
Number of extensions: 61
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)