Query= MSMg01no530_a12.b1 MSMg01no530_a12.b1 CHROMAT_FILE:
MSMg01no530_a12.b1 PHD_FILE: MSMg01no530_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:13 2005
(661 letters)
>mm_chr8_113881471_113882530
Length = 1060
Score = 1224 bits (633), Expect = 0.0
Identities = 654/661 (98%), Gaps = 2/661 (0%)
Strand = Plus / Minus
Query: 1 atcaatggaggtgttgatgtagtgtgtctttaaacagttaatgcaggaagggtaagaatg 60
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 1052 atcaatggaggtgttgatgtagtgtgtctttaaatagttaatgcaggaagggtaag-atg 994
Query: 61 gcttataaggtaaaggttcctgctgacaatcgaacttggtaatctaggttcagcccctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 gcttataaggtaaaggttcctgctgacaatcgaacttggtaatctaggttcagcccctgg 934
Query: 121 gaatccacatggtggaaggaagttgtcctctgacctccataaatccactgtggcatgcat 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 933 gaatccacatggtggaaggaagttgtcctctgacctctataaatccactgtggcatgcat 874
Query: 181 gcacccacacacatgtgtatacacacatacagtatagatatgtataaaatttcttaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 gcacccacacacatgtgtatacacacatacagtatagatatgtataaaatttcttaaaag 814
Query: 241 taaaacaaaattatggcaaataagaaggaaaggacagaggagatgggaaaccacaagaaa 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 813 taaaacaaaattatggcaaataagaaggaaaggacagaggagacgggaaaccacaagaaa 754
Query: 301 gcataaacctgaaccaatttgggatggagagatgactcagaggttgctccacgagtgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gcataaacctgaaccaatttgggatggagagatgactcagaggttgctccacgagtgtta 694
Query: 361 aaccctaaggacttcagggtgaggaacactataggggacccaggtgactatcccccaccc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 693 aaccctaaggacttcagggtgaggaacactataggggacccaggtgactatccccc-ccc 635
Query: 421 cactccaaagtaaaagggcaattcaacaagaagatataccagggcaaccttaccagatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cactccaaagtaaaagggcaattcaacaagaagatataccagggcaaccttaccagatca 575
Query: 481 gtgtcacacctgcagatgacagtaattgtagttacctgtgcagccgggaatgtggagaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gtgtcacacctgcagatgacagtaattgtagttacctgtgcagccgggaatgtggagaaa 515
Query: 541 tgggtgaatgccttaagccatgtaaagttcttacagtcatggttgacataatacatgctc 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 514 tgggtgaatgccttaagccatgtaaagttcttactgtcatggttgacataatacatgctc 455
Query: 601 agtgagtattgaggttggggcaaaaccaagctctcatgtgaccttgtgcaggcccttcta 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 454 agtgagtattgaggttggggcaaaaccaagctctcatgtgaccttgcgcaggcccttcta 395
Query: 661 g 661
|
Sbjct: 394 g 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_a12.g1 MSMg01no530_a12.g1 CHROMAT_FILE:
MSMg01no530_a12.g1 PHD_FILE: MSMg01no530_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:13 2005
(637 letters)
>mm_chr8_113708449_113709484
Length = 1036
Score = 1166 bits (603), Expect = 0.0
Identities = 629/639 (98%), Gaps = 5/639 (0%)
Strand = Plus / Plus
Query: 1 agtgtagggagtgaggaaaatatgcaattggaatacaaagtgagccaggtgcaatgatga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 agtgtagggagtgaggaaaatatgcaattggaatacaaactgagccaggtgcaatgatga 260
Query: 61 aggaacccctttaatctgaggctttgggaggtagaggcaattggatctcggtgaattcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaacccctttaatctgaggctttgggaggtagaggcaattggatctcggtgaattcga 320
Query: 121 ggttagcttgatctacatagcaagttctaggatagtcagggctacataaagagaccctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttagcttgatctacatagcaagttctaggatagtcagggctacataaagagaccctat 380
Query: 181 ctcaaaacaaaaacaaaaacaaaaacaacaaaaaaaaaaaaaaaggaaaaatagactata 240
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaaacaaaaacaaaaacaaaaaca--aaaaaaaaaaaaaaaggaaaaatagactata 438
Query: 241 aactgatgttatgattgtatatacattctggccc--gatattaacaaaaaaaccgcgagc 298
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 439 aactgatgttatgattgtatatacattctggcccctgatattaacaaaaaaaccccgagc 498
Query: 299 aaagctccggggagacttggtctggagaatgcattacgcagccatccttgatgtgagaag 358
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 499 aaagctccggagagacttggtctggagaatgcattatgcagccatccttgatgtgagaag 558
Query: 359 cataggctagtcatagccctgtcgtaactgtggtaaatctggaggagtggacactcatta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cataggctagtcatagccctgtcgtaactgtggtaaatctggaggagtggacactcatta 618
Query: 419 ggataataattatccacatactttacagttcagcacttgctgataaccattaccagttca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ggataataattatccacatactttacagttcagcacttgctgataaccattaccagttca 678
Query: 479 ttaaattaatctagagacagatgttgaagtctgctgctgtcaaggaataaaactttcaaa 538
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 679 ttaaattaatctagagacagatgttgaagtctgttg-tgtcaaggaataaaactttcaaa 737
Query: 539 gtaaaaagaaacccacccaaattgctcaaagatattcttcagtttgactaaggctagata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtaaaaagaaacccacccaaattgctcaaagatattcttcagtttgactaaggctagata 797
Query: 599 atatagaagacaaaggacgactctatccttctggaaaaa 637
|||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atatagaagacaaaggacgactctatccttctggaaaaa 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
