BAC Information

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BAC

Clone NameMSMg01-530H12
Chromosome8 (Build37)
Map Location 84,549,741 - 84,550,300
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneLOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530H12.T7 (MSMg01no530_h12.b1)MSMg01-530H12.TJ (MSMg01no530_h12.g1)
ACCAG599100AG599101
length780789
length of high quality
(start - end)
669 (49 - 717)560 (77 - 636)
definitionCHROMAT_FILE: MSMg01no530_h12.b1 PHD_FILE: MSMg01no530_h12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:48 2005CHROMAT_FILE: MSMg01no530_h12.g1 PHD_FILE: MSMg01no530_h12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:06:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGTAATGTGAGATATGGAGTCTAAATTGGTCATTGTTTTG
TCAGGCAAGCCTTCCACAAGTGGAGTGGGTTGCATTTGGTTGAATTGTTA
TCCAAGAGGGGTGGGTTGTGGAAATCCCTAAACAACCTTGGCTGATGCTA
GGACAGAGGGTAGATCCCTAAAAACTGACAGTGTGACCCCATTGCAAAGG
ACAGCATCTACATAGGTCTTTGAATGTGGAGATGTAAAGCTAGTGCCTTC
ATGAAGACTTCATCCCTACATTCTAGTTTCTTTGGCATGGGAAGGTACTT
TATAGATTACTGAAAGAGACACCTATACAGCAGCCCAGCCACAAAATCCT
CAACCTACAATCTTTCCTCTCTTGAACACATACTGGGGCAATGATGGCAC
AGAACTTGTAGCTCTGGCCAACTAATGTCTGAATAAAATTGAAGCTCAAG
CCATGAAAGAGAGCTCATGCTCTATAATGCCTGGAGACCTAAGGTGGAAC
TGAACATGCCTGCCTAACCTCCAAAAACCATATATGGAGAGAAAGGGAGA
GGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGACAGACAGACAGACAGACAGAGAGAGACAGAGAGAGACAGAGACA
GAAACAGGGACAGAGACACAGACACAGAGACAGAGACAGAGAGGCTGAGA
GAGAAACAGAGATAGATAGAGAGACAGAGG
NNCCCATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCCAATCAGACAGTTGGGTTT
CAATCCCTGAAACTCACATCCAGGAGGGAGCACAACACAGAGATGTTTTC
TGGACTCCAGGAATGTGTCCTGGCATGCAGATGCCCTCACCATGCAGCAT
AGTAATGACATTTCTAGAAAATAGATCAGTATAATGAGCAGCATTTATTG
CATCAAATGCCTACATCTCAGCTTATCTGAGTCATCTAGGTTAGGAGCAG
TGTGGTACAAATATCGTTACACTCATCAAAACACAAGATAGGATCATTGT
GACCTCATGAAATCACATCTCTCATGGTGGCTGTGTGAAAGCAAAGGAGT
AGCTCTGTGGCTTGGATCTGAATCTCTGCTATTTGTTAAAGGCTTGATCC
TTTGTGCACCACTCCTGGGAGGTGATGGAGTCTCCAGGAGATCAGACCCC
ATGAGAAGTATTTAAGTTATTAGGGATTTGGCCCCTAGGGTGTTTGGAGA
ACCACTCTCTCCATTTCCCTCTTTAGCCGTCTAGCTATGGAATGAGCAAT
GTACTTCACCCATACTCTCTGTCATTGTCACAAGGAAGCCCACCATAGAG
TAATGGATTTAGTCAGCCTGGGACTAGATATTTCAAAGCTTTTATGCAAC
ATAGATAGAACTTTGCTCTTTTCTAGGTCATTGTATTTTGACTAATACAG
TCGGTAATGTAAGGAAGCCAAATCAGTATTTATTAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_h12.g1 MSMg01no530_h12.g1 CHROMAT_FILE:
MSMg01no530_h12.g1 PHD_FILE: MSMg01no530_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:48 2005
         (560 letters)



>mm_chr8_84549541_84550500
          Length = 960

 Score = 1083 bits (560), Expect = 0.0
 Identities = 560/560 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccaatcagacagttgggtttcaatccctgaaactcacatccaggagggagcacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccaatcagacagttgggtttcaatccctgaaactcacatccaggagggagcacaac 260

                                                                       
Query: 61  acagagatgttttctggactccaggaatgtgtcctggcatgcagatgccctcaccatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagagatgttttctggactccaggaatgtgtcctggcatgcagatgccctcaccatgca 320

                                                                       
Query: 121 gcatagtaatgacatttctagaaaatagatcagtataatgagcagcatttattgcatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatagtaatgacatttctagaaaatagatcagtataatgagcagcatttattgcatcaa 380

                                                                       
Query: 181 atgcctacatctcagcttatctgagtcatctaggttaggagcagtgtggtacaaatatcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcctacatctcagcttatctgagtcatctaggttaggagcagtgtggtacaaatatcg 440

                                                                       
Query: 241 ttacactcatcaaaacacaagataggatcattgtgacctcatgaaatcacatctctcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacactcatcaaaacacaagataggatcattgtgacctcatgaaatcacatctctcatg 500

                                                                       
Query: 301 gtggctgtgtgaaagcaaaggagtagctctgtggcttggatctgaatctctgctatttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggctgtgtgaaagcaaaggagtagctctgtggcttggatctgaatctctgctatttgt 560

                                                                       
Query: 361 taaaggcttgatcctttgtgcaccactcctgggaggtgatggagtctccaggagatcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaggcttgatcctttgtgcaccactcctgggaggtgatggagtctccaggagatcaga 620

                                                                       
Query: 421 ccccatgagaagtatttaagttattagggatttggcccctagggtgtttggagaaccact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccatgagaagtatttaagttattagggatttggcccctagggtgtttggagaaccact 680

                                                                       
Query: 481 ctctccatttccctctttagccgtctagctatggaatgagcaatgtacttcacccatact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctctccatttccctctttagccgtctagctatggaatgagcaatgtacttcacccatact 740

                               
Query: 541 ctctgtcattgtcacaagga 560
           ||||||||||||||||||||
Sbjct: 741 ctctgtcattgtcacaagga 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)