BAC Information

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BAC

Clone NameMSMg01-531L10
Chromosome8 (Build37)
Map Location 107,287,148 - 107,491,251
singlet/doubletdoublet
Overlap geneLOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6
Downstream geneLOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531L10.T7 (MSMg01no531_l10.b1)MSMg01-531L10.TJ (MSMg01no531_l10.g1)
ACCAG600046AG600047
length776781
length of high quality
(start - end)		612 (48 - 659)596 (78 - 673)
definitionCHROMAT_FILE: MSMg01no531_l10.b1 PHD_FILE: MSMg01no531_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:26 2005CHROMAT_FILE: MSMg01no531_l10.g1 PHD_FILE: MSMg01no531_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:26 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(107,490,643 - 107,491,251)(107,287,148 - 107,287,743)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATAGAAGTTTACAGGGGCATGGGAACCTAGAGGTGGGACAGAG
AGTGACTTACTTGTCCCTCACCTGGAGCTTTTTTGATATATATTTGGTAT
CAAGATACCTTGATACATTGTTACTTGGAATCGCAAGAGTTAAATTGGAG
GCAGAGCCCCAGGCTGGAGCACTAACACTGTAAATGTACTCATGGCCTTC
CCAGCTGAGTGATTTTGTTAGGATAATAGAGTATCAGCAACCCATTTTCG
CCTCTGTACCCAGATTTCACTCTCTTAAACTAGACATAAGGAGACCAACT
ACCATACTGCTCCACAGTGCTCACCCATGACCCCCGTCTCTGAGCTGCTC
CACTAAGCGTTGTCACAGTGGTACTCACGCTGAAAATATGCTACTTGGAG
AGAAGGGATCACAAACATGAAGTCTTCCATCATCTCGGTGAACTGTATTT
GGAGAGTCTTGGGGTCCTCAATGTCCTCCATGTACTCTTCCATCAACAGA
TCACTACACTCAGGAGGCAGCATCTATACCAGAGACATCAGAAAGATTGA
GGTTAGGCATGTTATTGGTCAAGTAGGTAGTACATTTGGGTGTGGGGAAA
ATGGGGCCTGGGATAACATATGGTATAGGGAAAAAGTTCTTGCTCTGAGG
TGACCCCACACAGCATCATACCTATCTCCTGACCTTTATTTATAGGGATG
CTGTCTGAGAAAGAGATATGAGGGAN

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTAGAGGCTCATATGGATCTT
GCTACTGGATAATGAAGAAGTGAGGCAGCAAACCAATAATTTGAGGTCCA
ACAAGAGTTGAGATTGTGAGTGTTGTGTGAGATGGCATATGCTTGGGTTT
TTGTCTTTCTCATGGGTCTAGTTGACATCACTAAGGAGGAGAAGCTGCTG
AATCAGAGGATGATGAAGTACTGGGCCAACTTTGCAAGACATGGGTGAGA
ACACACCTCTTTCCCCACATGTCGGTTGTGGGTCTCTAACTCAGGCTCAA
TTTTAGATGGTGACTTTCTTAGCATGCATGACTTTGATCACAAGATGGAG
TCTTCTCTACACAATAACCCATTTATATGAATACTTTGTAGTTGTCAGGT
ACTGGTCATCTCACGGTTTCTGAGCTGGTGGGGTATAGTGTTGTGGTACT
GCTCTTTAGATCTTGCCTCATAGAGGGAGACATAAAAGAGCTCATGTAGT
CTTCCCCCACATGAAGCAGAAACTAGCAAGTGACACTTGTATGTGCGTAT
CACGACTCCTTTCTCACTAGTCCCCTTAACCACTGTCTTCCTTGTTTCAT
TGCCATGACCCAAAACATGGGACCAGAGTGACCTCACCCTTCTTTTCTTG
GTGGCTTATCCACATGGAACCCAACAGTGAAGGTCTACCCTACTGGGCCA
TGCTGTATCCAGATGAGAAGTATCTACAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_l10.b1 MSMg01no531_l10.b1 CHROMAT_FILE:
MSMg01no531_l10.b1 PHD_FILE: MSMg01no531_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:26 2005
         (612 letters)



>mm_chr8_107490440_107491451
          Length = 1012

 Score = 1131 bits (585), Expect = 0.0
 Identities = 603/609 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagaagtttacaggggcatgggaacctagaggtgggacagagagtgacttac 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ggaattcatagaagtagacaggggcatgggaacctagaggtgggacagagagtgacttac 753

                                                                       
Query: 64  ttgtccctcacctggagcttttttgatatatatttggtatcaagataccttgatacattg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttgtccctcacctggagcttttttgatatatatttggtatcaagataccttgatacattg 693

                                                                       
Query: 124 ttacttggaatcgcaagagttaaattggaggcagagccccaggctggagcactaacactg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttacttggaatcgcaagagttaaattggaggcagagccccaggctggagcactaacactg 633

                                                                       
Query: 184 taaatgtactcatggccttcccagctgagtgattttgttaggataatagagtatcagcaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 taaatgtactcatggccttcccagctgagtgattttgttaggataatagagtatcagcaa 573

                                                                       
Query: 244 cccattttcgcctctgtacccagatttcactctcttaaactagacataaggagaccaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cccattttcgcctctgtacccagatttcactctcttaaactagacataaggagaccaact 513

                                                                       
Query: 304 accatactgctccacagtgctcacccatgacccccgtctctgagctgctccactaagcgt 363
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 accatactgcttcacagtgctcacccatgacccccgtctctgagctgctccactaagcgt 453

                                                                       
Query: 364 tgtcacagtggtactcacgctgaaaatatgctacttggagagaagggatcacaaacatga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtcacagtggtactcacgctgaaaatatgctacttggagagaagggatcacaaacatga 393

                                                                       
Query: 424 agtcttccatcatctcggtgaactgtatttggagagtcttggggtcctcaatgtcctcca 483
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 392 agtcttccatcatttcggtgaactgtatttgaagagtcttggggtcctcaatgtcctcca 333

                                                                       
Query: 484 tgtactcttccatcaacagatcactacactcaggaggcagcatctataccagagacatca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgtactcttccatcaacagatcactacactcaggaggcagcatctataccagagacatca 273

                                                                       
Query: 544 gaaagattgaggttaggcatgttattggtcaagtaggtagtacatttgggtgtggggaaa 603
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 272 gaaagattgaggttaggcatgttattggtcaagtaggtagtacacttgggtgtggggaaa 213

                    
Query: 604 atggggcct 612
           |||||||||
Sbjct: 212 atggggcct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no531_l10.g1 MSMg01no531_l10.g1 CHROMAT_FILE:
MSMg01no531_l10.g1 PHD_FILE: MSMg01no531_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:26 2005
         (596 letters)



>mm_chr8_107286948_107287943
          Length = 996

 Score = 1137 bits (588), Expect = 0.0
 Identities = 594/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttagaggctcatatggatcttgctactggataatgaagaagtgaggcagcaaaccaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttagaggctcatatggatcttgctactggataatgaagaagtgaggcagcaaaccaat 260

                                                                       
Query: 61  aatttgaggtccaacaagagttgagattgtgagtgttgtgtgagatggcatatgcttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttgaggtccaacaagagttgagattgtgagtgttgtgtgagatggcatatgcttggg 320

                                                                       
Query: 121 tttttgtctttctcatgggtctagttgacatcactaaggaggagaagctgctgaatcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgtctttctcatgggtctagttgacatcactaaggaggagaagctgctgaatcaga 380

                                                                       
Query: 181 ggatgatgaagtactgggccaactttgcaagacatgggtgagaacacacctctttcccca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ggatgatgaagtactgggccaactttgcaagacatgggtgagaacacacctcttgcccca 440

                                                                       
Query: 241 catgtcggttgtgggtctctaactcaggctcaattttagatggtgactttcttagcatgc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 catgtcggttgtgggtctctaactcgggctcaattttagatggtgactttcttagcatgc 500

                                                                       
Query: 301 atgactttgatcacaagatggagtcttctctacacaataacccatttatatgaatacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgactttgatcacaagatggagtcttctctacacaataacccatttatatgaatacttt 560

                                                                       
Query: 361 gtagttgtcaggtactggtcatctcacggtttctgagctggtggggtatagtgttgtggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtagttgtcaggtactggtcatctcacggtttctgagctggtggggtatagtgttgtggt 620

                                                                       
Query: 421 actgctctttagatcttgcctcatagagggagacataaaagagctcatgtagtcttcccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgctctttagatcttgcctcatagagggagacataaaagagctcatgtagtcttcccc 680

                                                                       
Query: 481 cacatgaagcagaaactagcaagtgacacttgtatgtgcgtatcacgactcctttctcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacatgaagcagaaactagcaagtgacacttgtatgtgcgtatcacgactcctttctcac 740

                                                                   
Query: 541 tagtccccttaaccactgtcttccttgtttcattgccatgacccaaaacatgggac 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagtccccttaaccactgtcttccttgtttcattgccatgacccaaaacatgggac 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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