BAC Information

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BAC

Clone NameMSMg01-532H08
Chromosome8 (Build37)
Map Location 71,970,728 - 71,971,361
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532H08.T7 (MSMg01no532_h08.b1)MSMg01-532H08.TJ (MSMg01no532_h08.g1)
ACCAG600612AG600613
length747747
length of high quality
(start - end)		664 (50 - 713)622 (81 - 702)
definitionCHROMAT_FILE: MSMg01no532_h08.b1 PHD_FILE: MSMg01no532_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:23 2005CHROMAT_FILE: MSMg01no532_h08.g1 PHD_FILE: MSMg01no532_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NGGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTATGTTAGCCAGATTAGATCAAACTAGCCTCTGACTTCT
TAAAATTTCTGTGATCCTTCTGTGCCTGTCTACAGAGCTCTGGATTCCAT
ATCTGTACCCCTCCCACACACATACCTTAGTCATTCATTTCTTCATTGAT
TATTTTCATTACCATCATCATTTCCTGAGGTCTGCCTTGTCTTTCCTTCC
ATCTCACAGACTATGACATAAGATTCCTCTTATTTTCCATTTGTGCTTAA
GTCTTGGTTTATGCTGTGGTTGGCCAACTGTAATGGTTATGGAATTCTGG
TGTTTTTTTTTTTTTCCATGGTATCCTATCTTCTCCATTCTTAAAATAGA
AGCTTTTGCTTTAGTATTCAATTCAGGCACCATATCCTTTAAGCATCCTC
TTTTTGCTGTGCTGGGCTCTGGCATCCTTGCTGTGGATGCACACATATGA
TCAATGAATAATAGAGTTTCTGGGTTCTAGACATTGTATTAGTGGCTTTA
TATTCCCATTTCTCTTGATCATTGCAGCAACCTTTCAACGAATATTATTC
TTATCTACATTTCTGAAATGAGCAAGCTGGGTTCAGAGAAAGCTGTCAGC
TTTCCCAAAGCTGACAAGTGGTAAACTGATACTCAAACCACATGTTTGCT
AAATGAAAACGAAACAATAGGTGGATGGAGGCTGCAGCTAATGTCAT

GGCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTCAGCAATTGACTAT
GATTGCTGACTGCTCTCCTCCCACCTTTTCTCAAGAGAAAATATGAGGAA
TACTTAGCTCTTAATTAAAACACAAACAAAGGTGCACGCGCACGCAAACA
CACAAACACACACACACACACACACTAAAAAGAATTAAAGACAAGATCGG
GCATGCTCAGGGTGGTTTGGCTGTAGACACTTATGGAAGTCTAAAAGGAA
GGATTCCAGGCCTGAAGGAGATAGGAACTCCAGAGAATGACCAACCACCA
GAATCAAATAACATGAACCCTCAGGGCACTCAGAGATGGAACAATGAAAC
AAAGAACAAACATGGGTTGGACGGATATCTCCGAGCACCTATGTAGCAGA
GGGGCAGCTAGGTCTTCACATGGGTCCCAATCAACTGGAATGGGGGTATC
AAAAAAAGCTGTTCATCCTACCTCAGTTTTATTCTTCTAGCTGAGCTACT
TTTTCTGTCCTCAGAGAGAGACGAAGTGCCAGGGTTTGGACATACAGGGA
GTCCCAAACTGCTCAGAGGTGAAGTGGAGGAGGGGCAGGGAGAGACTGTG
GGACTGGGTGACCAGGAGGGGGTCACTGAGCTAGATGTAAACATAAGAAA
AAAATTAATTAATTTTTACAGAAATCATTAAAGTTTTGAAATGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_h08.g1 MSMg01no532_h08.g1 CHROMAT_FILE:
MSMg01no532_h08.g1 PHD_FILE: MSMg01no532_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:23 2005
         (622 letters)



>mm_chr8_71970528_71971549
          Length = 1022

 Score = 1098 bits (568), Expect = 0.0
 Identities = 613/634 (96%), Gaps = 12/634 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttcagcaattgactatgattgctgactgctctcctcccaccttttctcaagagaaa 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 201 acttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaagaggaa 260

                                                                       
Query: 61  atatgaggaatacttagctcttaattaaaacacaaacaaaggtgcacgcgcacgcaa--- 117
           |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||   
Sbjct: 261 atatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacacacacgcaaaca 320

                                                                       
Query: 118 ---acacacaaacac--acacacacacacacactaaaaagaattaaagacaagatcgggc 172
              ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaagatcgggc 380

                                                                       
Query: 173 atgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccaggcc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccaggcc 440

                                                                       
Query: 233 tgaaggagataggaactccagagaatgaccaaccaccagaatcaaataacatgaaccctc 292
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatgaaccctc 500

                                                                       
Query: 293 agggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatctcc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatctcc 560

                                                                       
Query: 353 gagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaatg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaatg 620

                                                                       
Query: 413 ggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctacttt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctacttt 680

                                                                       
Query: 473 ttctgtcctcagagagagacgaagtgccagggtttggacatacagggagtcccaaactgc 532
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ttctgtcctcagagagagacgaagtgccagggtttggacatacatggagtcccaaactgc 740

                                                                       
Query: 533 tcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccaggaggggg 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccaggaggggg 800

                                             
Query: 593 tcactgagctagatgtaaacat----aagaaaaa 622
           ||||||||||||||||||||||    ||||||||
Sbjct: 801 tcactgagctagatgtaaacatgaacaagaaaaa 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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