BAC Information

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BAC

Clone NameMSMg01-532L11
Chromosome8 (Build37)
Map Location 4,475,840 - 4,476,399
singlet/doubletsinglet
Overlap genenone
Upstream gene1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1
Downstream geneLass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532L11.T7 (MSMg01no532_l11.b1)MSMg01-532L11.TJ (MSMg01no532_l11.g1)
ACCAG600808AG600809
length748742
length of high quality
(start - end)		646 (53 - 698)588 (82 - 669)
definitionCHROMAT_FILE: MSMg01no532_l11.b1 PHD_FILE: MSMg01no532_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:43 2005CHROMAT_FILE: MSMg01no532_l11.g1 PHD_FILE: MSMg01no532_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTTTGATGATAGCCCGTTTCCTGGCTTGCCCAGTTGA
TAGCAGTAGGAGGCCTTGCTACAGGACTGCTGGAGCATATTTACATGGTA
GACATGTTTTACATATCAAACAGTCCAGAAGACCAGGTCTGACTAGAGTC
CTTGAGGTGAAGTTAGAGAAAGTACATCCCTGGAAACATAACTAGACAGT
TACACATGGTTGCTGGCTCCCTCCCTGCTCTGCTTCCTGTTCCGTGTCAG
GTGATCAATGTCCACCTTTACACACAGCCACCACCATGATGTGTAGCTTC
ATCCCAAATTCAGAGTAATGTAGCCATTCAATCAAAGACTGAACCATTTA
AAACCATGAGCCGGGCTGGAGAAATGGCTCAGGGGTTGGGAGCATCGACT
GCTCTTCGGAAGGTCCTGAGTTCGAATCCCAGCAACCACATGGTGGCTCA
CAACCATCCATAATGAGATCTGACGTCCTCTTCTGGTGCATCTGAAGACA
GCTACAGTGTACTTAGATATAATAATAAATAAATCAAAATAAAAAACCAA
CAACCATGAGCCATAAAAGTCTCCATTCTGCTGGGCAATGATGGTGTACA
CCTTTAATCCTAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTGG
AGGCCAGCCTGGTCTACAGAGTAAGTTCTAGGACACCCAGGACTACAC

TTTTACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGGCTTT
TATCATGAATGGGTGTTGGATCTTGTCGAATGCTTTCTCCGCAACTAATG
AGATGATCATGTGGTTTTTGTCCTTGAGTTTGTTTATATACTGGATTACG
TTGATGGATTTCTGTATATTGAACCATCCCTACATCCCTGGGATGAAACC
TCCTTGGTCAGGATGGATGACTGTTTTGATGTGTTCTTGGATTTGGTTAG
GGAGAACTTTATTGAGGATTTTTGCATCGATATTCATAAGGGAAATTGGT
CTGGAGTTCTCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGT
AATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACCTTCTGTTTCTATTT
TGTGGAATAGTTTGTGAAGAACTGGGATTAGATCTTCTTTGAAGGTCTGA
TAGAACTCTGCATTAAACCCATCTGGTCCTAGGCTTTTTTTGGTTGGGAG
ACTATTAATGACTGCTTCTATTTCTTTAGGGGATATAGGACTGTTGAGAT
CATTAACCTGATCTTGATTTAGCTTTGGTACCTGGTATCTGTCTAAAAAC
TTGTCCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
GAAGGATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_l11.b1 MSMg01no532_l11.b1 CHROMAT_FILE:
MSMg01no532_l11.b1 PHD_FILE: MSMg01no532_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:43 2005
         (646 letters)



>mm_chr8_4475840_4476885
          Length = 1046

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactttgatgatagcccgtttcctggcttgcccagttgatagcagtaggaggcct 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaattcactttgaagatagcccgtttcctggcttgcccagttgatagcagtaggaggcct 501

                                                                       
Query: 65  tgctacaggactgctggagcatatttacatggtagacatgttttacatatcaaacagtcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctacaggactgctggagcatatttacatggtagacatgttttacatatcaaacagtcc 441

                                                                       
Query: 125 agaagaccaggtctgactagagtccttgaggtgaagttagagaaagtacatccctggaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaagaccaggtctgactagagtccttgaggtgaagttagagaaagtacatccctggaaa 381

                                                                       
Query: 185 cataactagacagttacacatggttgctggctccctccctgctctgcttcctgttccgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cataactagacagttacacatggttgctggctccctccctgctctgcttcctgttccgtg 321

                                                                       
Query: 245 tcaggtgatcaatgtccacctttacacacagccaccaccatgatgtgtagcttcatccca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaggtgatcaatgtccacctttacacacagccaccaccatgatgtgtagcttcatccca 261

                                                                       
Query: 305 aattcagagtaatgtagccattcaatcaaagactgaaccatttaaaaccatgagccgggc 364
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 260 aattcagagtaatgtggccattcaatcaaagactgaaccatttaaaaccatgagccaggc 201

                                                                       
Query: 365 tggagaaatggctcaggggttgggagcatcgactgctcttcggaaggtcctgagttcgaa 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 tggagaaatggctcaggggttgggagcatcgactgctcttccgaaggtcctgagttcgaa 141

                                                                       
Query: 425 tcccagcaaccacatggtggctcacaaccatccataatgagatctgacgtcctcttctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tcccagcaaccacatggtggctcacaaccatccataatgagatctgacgtcctcttctgg 81

                                                                       
Query: 485 tgcatctgaagacagctacagtgtacttagatataataataaataaatcaaaataaaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  tgcatctgaagacagctacagtgtacttagatataataataaataaatcaaaataaaaaa 21

                               
Query: 545 ccaacaaccatgagccataa 564
           ||||||||||||||||||||
Sbjct: 20  ccaacaaccatgagccataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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