BAC Information

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BAC

Clone NameMSMg01-533A18
Chromosome8 (Build37)
Map Location 128,958,673 - 129,093,393
singlet/doubletdoublet
Overlap geneEG619653
Upstream geneSipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik
Downstream geneIrf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3, EG628847
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533A18.T7 (MSMg01no533_a18.b1)MSMg01-533A18.TJ (MSMg01no533_a18.g1)
ACCAG601061AG601062
length737753
length of high quality
(start - end)
563 (50 - 612)480 (77 - 556)
definitionCHROMAT_FILE: MSMg01no533_a18.b1 PHD_FILE: MSMg01no533_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:09 2005CHROMAT_FILE: MSMg01no533_a18.g1 PHD_FILE: MSMg01no533_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,092,839 - 129,093,393)(128,958,673 - 128,959,156)
sequence
ATTTTTTTATTTTGTCTACTTTCACTATACGACNACTATAGTTCGAGATC
CGCGGAATTCACTTCCTATTCCCATGTAAACAAACAAACCAAAAAAAAGG
CAGAGTAGGCAGTCCACACTTGTAGTCTGAGCACTGGGGAGGCCAAGACA
GTCATGTCCCTGGGTCTCTCTGGCAAGCCAGCCCAGGCCATTTGGTGAGA
GACCCAGTCTGAAAGTAAACAAGGTGGGCAGAGCCCGAGGAACAACACCT
TCTGGCCTCCACATGCAAGCCAGACAAATGTGTACATATACACAGACAAA
CAAACATTCACACATACATACGTATGAAGTTTTATTCTGTCCATTTGTGC
TGCCAAGAACTCTTGGACAAAACCCTCAGAGAGCAGGAGCTGTAGGAGTG
GGGCCACCTGGGAAGTATCTGCATCCCAGCAAGCCTCTGTCCCCTCATCT
TTTCCTCATTAGTCCAATAACGTGTGCAAGATAAACTCCCCAGACACACC
TTCTGCAGCACAACATACATATATGACATATAGCGCACATATGCCAACAT
ATAATATGCATATACAACATGCATATAGAGCATACATACTTCACACCCTT
TCTACCCCTAAGACTCACACACACACACACACACACACACACTCACACTC
ACACACCCCACTATATACACCTTTTAACCCCTATATTTCCAACACAGGCA
TCCCCACCTGTATACGCTTATCCTCACACTTCCCAGG
NCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCCCAAACAATTCAAAACTTA
CCTTTTCTGGAATATTCTGAACAATGATGTCCAAATGTGATAAAACAGAT
AAAAATGTACAAATGCTTGCCTTAATTTTTTCTTCACCCTGACAGAAGAT
GAGATAGAAAAATCGTTATTTGGGGCTTAACTGTGAGCAGAGGCTCCTGG
ACGTTGGACCGGCAGAGGTAGGAGGCAGCCTCTGCTCTCTTCCCTGAAGC
AGCTTGAGTTCGCCTTGTGTCGGGGCCACTCCCTGCAGCCCAAGGTAATG
CAGGCAACGCTGAGAGAACAGTCAGACAGCACTGAATGGCCTCACTGTAC
CAAGCCCCTGGGTCAGGCCTACCGGACAGGAGTGGGGACTGGGGTGAGGA
CATAGAGGAAGCTGGTAAAAAGAACAAGATAAATAAAGACACAGGGCAGC
GGAGGTGAGAGTCACACTGACCCTTGGGACTGTGTCCTGCTGTTGCATAC
ACGGTGACAAGCCATTGGGGAAGAAATGCCATCTGGAGCCCTAGCCCTTG
TAGACACATATGGCTATCAAGACTCTCAGGACGTAAAACCCCAATAAATA
GATGTTGTGGACACTGAATAAGATAGGTGGTTGAGGAACCCTATCAACCC
CAAACCTGGGTGGGACCTTGGGGGTTTTTTTTTCAAACTCTTTAGTAAAT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_a18.b1 MSMg01no533_a18.b1 CHROMAT_FILE:
MSMg01no533_a18.b1 PHD_FILE: MSMg01no533_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:09 2005
         (563 letters)



>mm_chr8_129092463_129093425
          Length = 963

 Score =  990 bits (512), Expect = 0.0
 Identities = 545/558 (97%), Gaps = 6/558 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   attcacttcct---attcccatgtaaacaaacaaaccaaaaaaaaggcagagtaggcagt 64
           |||||||||||   |  |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 931 attcacttcctaaaa--cccatgtaaacaaacaaacc-aaaaaaaggcagagtaggcagt 875

                                                                       
Query: 65  ccacacttgtagtctgagcactggggaggccaagacagtcatgtccctgggtctctctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ccacacttgtagtctgagcactggggaggccaagacagtcatgtccctgggtctctctgg 815

                                                                       
Query: 125 caagccagcccaggccatttggtgagagacccagtctgaaagtaaacaaggtgggcagag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 caagccagcccaggccatttggtgagagacccagtctgaaagtaaacaaggtgggcagag 755

                                                                       
Query: 185 cccgaggaacaacaccttctggcctccacatgcaagccagacaaatgtgtacatatacac 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cccgagaaacaacaccttctggcctccacatgcaagccagacaaatgtgtacatatacac 695

                                                                       
Query: 245 agacaaacaaacattcacacatacatacgtatgaagttttattctgtccatttgtgctgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agacaaacaaacattcacacatacatacgtatgaagttttattctgtccatttgtgctgc 635

                                                                       
Query: 305 caagaactcttggacaaaaccctcagagagcaggagctgtaggagtggggccacctggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caagaactcttggacaaaaccctcagagagcaggagctgtaggagtggggccacctggga 575

                                                                       
Query: 365 agtatctgcatcccagcaagcctctgtcccctcatcttttcctcattagtccaataacgt 424
            | |||| | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggcatctacgtccgagaaagcctctgtcccctcatcttttcctcattagtccaataacgt 515

                                                                       
Query: 425 gtgcaagataaactccccagacacaccttctgcagcacaacatacatatatgacatatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtgcaagataaactccccagacacaccttctgcagcacaacatacatatatgacatatag 455

                                                                       
Query: 485 cgcacatatgccaacatataatatgcatatacaacatgcatatagagcatacatacttca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgcacatatgccaacatataatatgcatatacaacatgcatatagagcatacatacttca 395

                             
Query: 545 caccctttctacccctaa 562
           ||||||||||||||||||
Sbjct: 394 caccctttctacccctaa 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no533_a18.g1 MSMg01no533_a18.g1 CHROMAT_FILE:
MSMg01no533_a18.g1 PHD_FILE: MSMg01no533_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:09 2005
         (480 letters)



>mm_chr8_128958473_128959356
          Length = 884

 Score =  890 bits (460), Expect = 0.0
 Identities = 477/484 (98%), Gaps = 4/484 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctcccaaacaattcaaaacttaccttttctggaatattctgaacaatgatgtccaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcccaaacaattcaaaacttaccttttctggaatattctgaacaatgatgtccaaat 260

                                                                       
Query: 61  gtgataaaacagataaaaatgtacaaatgcttgccttaattttttcttcaccctgacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgataaaacagataaaaatgtacaaatgcttgccttaattttttcttcaccctgacaga 320

                                                                       
Query: 121 agatgagatagaaaaatcgttatttggggcttaactgtgagcagaggctcctggacgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 321 agatgagatagaaaaatcgttatttggggcttaactgtgagcagaggctcctggatgctg 380

                                                                       
Query: 181 gaccggcagaggtaggaggcagcctctgctctcttc---cctgaagcagcttgagttcgc 237
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 381 gaccggcagaggtaggaggcagcctctgctctcttcttccctgaagcagcttgagttcgc 440

                                                                       
Query: 238 cttgtgtcggggccactccctgcagcccaaggtaatgcaggcaacgctgagagaacagtc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtgtcggggccactccctgcagcccaaggtaatgcaggcaacgctgagagaacagtc 500

                                                                       
Query: 298 a-gacagcactgaatggcctcactgtaccaagcccctgggtcaggcctaccggacaggag 356
           | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aagacagcactgaatggcctcactgtaccaagcccctgggccaggcctaccggacaggag 560

                                                                       
Query: 357 tggggactggggtgaggacatagaggaagctggtaaaaagaacaagataaataaagacac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggggactggggtgaggacatagaggaagctggtaaaaagaacaagataaataaagacac 620

                                                                       
Query: 417 agggcagcggaggtgagagtcacactgacccttgggactgtgtcctgctgttgcatacac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggcagcggaggtgagagtcacactgacccttgggactgtgtcctgctgttgcatacac 680

               
Query: 477 ggtg 480
           ||||
Sbjct: 681 ggtg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 884
Length adjustment: 10
Effective length of query: 470
Effective length of database: 874
Effective search space:   410780
Effective search space used:   410780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)