Query= MSMg01no533_a18.b1 MSMg01no533_a18.b1 CHROMAT_FILE:
MSMg01no533_a18.b1 PHD_FILE: MSMg01no533_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:09 2005
(563 letters)
>mm_chr8_129092463_129093425
Length = 963
Score = 990 bits (512), Expect = 0.0
Identities = 545/558 (97%), Gaps = 6/558 (1%)
Strand = Plus / Minus
Query: 8 attcacttcct---attcccatgtaaacaaacaaaccaaaaaaaaggcagagtaggcagt 64
||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 931 attcacttcctaaaa--cccatgtaaacaaacaaacc-aaaaaaaggcagagtaggcagt 875
Query: 65 ccacacttgtagtctgagcactggggaggccaagacagtcatgtccctgggtctctctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ccacacttgtagtctgagcactggggaggccaagacagtcatgtccctgggtctctctgg 815
Query: 125 caagccagcccaggccatttggtgagagacccagtctgaaagtaaacaaggtgggcagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 caagccagcccaggccatttggtgagagacccagtctgaaagtaaacaaggtgggcagag 755
Query: 185 cccgaggaacaacaccttctggcctccacatgcaagccagacaaatgtgtacatatacac 244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cccgagaaacaacaccttctggcctccacatgcaagccagacaaatgtgtacatatacac 695
Query: 245 agacaaacaaacattcacacatacatacgtatgaagttttattctgtccatttgtgctgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agacaaacaaacattcacacatacatacgtatgaagttttattctgtccatttgtgctgc 635
Query: 305 caagaactcttggacaaaaccctcagagagcaggagctgtaggagtggggccacctggga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caagaactcttggacaaaaccctcagagagcaggagctgtaggagtggggccacctggga 575
Query: 365 agtatctgcatcccagcaagcctctgtcccctcatcttttcctcattagtccaataacgt 424
| |||| | ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggcatctacgtccgagaaagcctctgtcccctcatcttttcctcattagtccaataacgt 515
Query: 425 gtgcaagataaactccccagacacaccttctgcagcacaacatacatatatgacatatag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gtgcaagataaactccccagacacaccttctgcagcacaacatacatatatgacatatag 455
Query: 485 cgcacatatgccaacatataatatgcatatacaacatgcatatagagcatacatacttca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgcacatatgccaacatataatatgcatatacaacatgcatatagagcatacatacttca 395
Query: 545 caccctttctacccctaa 562
||||||||||||||||||
Sbjct: 394 caccctttctacccctaa 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_a18.g1 MSMg01no533_a18.g1 CHROMAT_FILE:
MSMg01no533_a18.g1 PHD_FILE: MSMg01no533_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:09 2005
(480 letters)
>mm_chr8_128958473_128959356
Length = 884
Score = 890 bits (460), Expect = 0.0
Identities = 477/484 (98%), Gaps = 4/484 (0%)
Strand = Plus / Plus
Query: 1 ttctcccaaacaattcaaaacttaccttttctggaatattctgaacaatgatgtccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctcccaaacaattcaaaacttaccttttctggaatattctgaacaatgatgtccaaat 260
Query: 61 gtgataaaacagataaaaatgtacaaatgcttgccttaattttttcttcaccctgacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgataaaacagataaaaatgtacaaatgcttgccttaattttttcttcaccctgacaga 320
Query: 121 agatgagatagaaaaatcgttatttggggcttaactgtgagcagaggctcctggacgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 321 agatgagatagaaaaatcgttatttggggcttaactgtgagcagaggctcctggatgctg 380
Query: 181 gaccggcagaggtaggaggcagcctctgctctcttc---cctgaagcagcttgagttcgc 237
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaccggcagaggtaggaggcagcctctgctctcttcttccctgaagcagcttgagttcgc 440
Query: 238 cttgtgtcggggccactccctgcagcccaaggtaatgcaggcaacgctgagagaacagtc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtgtcggggccactccctgcagcccaaggtaatgcaggcaacgctgagagaacagtc 500
Query: 298 a-gacagcactgaatggcctcactgtaccaagcccctgggtcaggcctaccggacaggag 356
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 aagacagcactgaatggcctcactgtaccaagcccctgggccaggcctaccggacaggag 560
Query: 357 tggggactggggtgaggacatagaggaagctggtaaaaagaacaagataaataaagacac 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggggactggggtgaggacatagaggaagctggtaaaaagaacaagataaataaagacac 620
Query: 417 agggcagcggaggtgagagtcacactgacccttgggactgtgtcctgctgttgcatacac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggcagcggaggtgagagtcacactgacccttgggactgtgtcctgctgttgcatacac 680
Query: 477 ggtg 480
||||
Sbjct: 681 ggtg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 884
Length adjustment: 10
Effective length of query: 470
Effective length of database: 874
Effective search space: 410780
Effective search space used: 410780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|