Query= MSMg01no533_d22.b1 MSMg01no533_d22.b1 CHROMAT_FILE:
MSMg01no533_d22.b1 PHD_FILE: MSMg01no533_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:24 2005
(695 letters)
>mm_chr8_3581736_3582820
Length = 1085
Score = 934 bits (483), Expect = 0.0
Identities = 534/555 (96%), Gaps = 14/555 (2%)
Strand = Plus / Plus
Query: 143 aagatgactcaaactcagagcttactgctctagcacaggtctggaattcagttcccagca 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagatgactcaaactcagagcttactgctctagcacaggtctggaattcagttcccagca 402
Query: 203 ttcacagcaggaggctcacaacaaaaggaaatccaggctccagagaatgtgatgccccct 262
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 403 ttcacagcaggaggctcacaacaaaaggaaatccaggctccagaggatgtgatgccccct 462
Query: 263 ctggcgttctcctgcacatacacacacattcaaactcagccacagtcggctattttcgtt 322
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 463 ctggcattctcctgcacatacacacacattcaaactcagccacagtcggctat-----tt 517
Query: 323 tgttttgttatatattttttttgacagaagcctctctaagtagcctaaggtggctttgaa 382
||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 518 tgttttgttatat-tttcttttgacagaagcctctctaggtagcctagggtggctttgaa 576
Query: 383 cccatgatccttctgcctatgcctcccctgtattgggataactagtgtggaccaccacac 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cccatgatccttctgcctatgcctcccctgtattgggataactagtgtggaccaccacac 636
Query: 443 tttgatccagtgtttatattaactgcacatcaggattataccagttataagcattcaata 502
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 attgatccagtgtttatattaactgcacatcaggattataccagttataagcattcaata 696
Query: 503 actacatagggg-ctaatcccaactcc-actagacaggaaatttccataacacagctaat 560
||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 697 actacat-ggggactaatcccaac-cctactagacaggaaatttccataacacagctaat 754
Query: 561 attccatgactcattccatgaccatctgtgcctttaaccctacaacacacttttgttatt 620
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 755 att---t-actcattccatgaccgtctgtgcctttaaccctacaacacacttttgttatt 810
Query: 621 gacctggcaaataaggtctttcttgtctcctgtatgactgacctacatccttaaccccca 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gacctggcaaataaggtctttcttgtctcctgtatgactgacctacatccttaaccccca 870
Query: 681 aaacacttattctaa 695
|||||||||||||||
Sbjct: 871 aaacacttattctaa 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1085
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1075
Effective search space: 736375
Effective search space used: 736375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_d22.g1 MSMg01no533_d22.g1 CHROMAT_FILE:
MSMg01no533_d22.g1 PHD_FILE: MSMg01no533_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:24 2005
(622 letters)
>mm_chr8_3733176_3734190
Length = 1015
Score = 1156 bits (598), Expect = 0.0
Identities = 613/622 (98%), Gaps = 7/622 (1%)
Strand = Plus / Minus
Query: 1 acgctggagcacgtgtagagtgagagagaagtcaagatttctttttaggaaacacagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 acgctggagcacgtgtagagtgagagagaagtcaagatttctttttaggaaacacagaaa 756
Query: 61 ggaaaggaaagtctgccttccagaggggctggctattactcagctaggcagcccctggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ggaaaggaaagtctgccttccagaggggctggctattactcagctaggcagcccctggtg 696
Query: 121 aacgctgccagcctctggacttaaatgtcctattcttccattttcccttccctccttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 aacgctgccagcctctggacttaaatgtcctattcttccattttcccttccctccttggt 636
Query: 181 cacggggaaggtctgtgaatgtctccttcctggggcaggtgggggctttcttggagtcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cacggggaaggtctgtgaatgtctccttcctggggcaggtgggggctttcttggagtcat 576
Query: 241 ctttacccataattcagtctggtataattaaatgcagttgaactaagagtacataaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 575 ctttacccataattcagtctggtataattaaatgcagttgaactaagagtacatataaag 516
Query: 301 ttataactaagggtaaaattgagaagttaactagaatggcaatggtatgtgtgcctcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttataactaagggtaaaattgagaagttaactagaatggcaatggtatgtgtgcctcagg 456
Query: 361 gaacagaatgtatgtgttcctttataaacagctcctataggcacttactggagcccaggt 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaacagaatgtatgtgtccctttataaacagctcctataggcacttactggagcccaggt 396
Query: 421 gggcctttttttcccacagagcctggtccttcccattacttagttgggttggctctctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggcctttttttcccacagagcctggtccttcccattacttagttgggttggctctctcc 336
Query: 481 cggccagctgaaagcccttttgtttatcttttcctgtgcctccaaactcatcattttagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cggccagctgaaagcccttttgtttatcttttcctgtgcctccaaactcatcattttagc 276
Query: 541 cttcacatttctttttaaccctaatggttttttaactgtagtaaattccatttcttccaa 600
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 c-------ttctttttaaccctaatggttttttaactgtagtaaattccatttcttccaa 223
Query: 601 cattagctctttgagagctgaa 622
||||||||||||||||||||||
Sbjct: 222 cattagctctttgagagctgaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1015
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1005
Effective search space: 615060
Effective search space used: 615060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
