BAC Information

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BAC

Clone NameMSMg01-533E20
Chromosome8 (Build37)
Map Location 109,055,198 - 109,055,861
singlet/doubletsinglet
Overlap geneCdh3
Upstream geneAtp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik
Downstream geneLOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-533E20.T7 (MSMg01no533_e20.b1)MSMg01-533E20.TJ (MSMg01no533_e20.g1)
ACCAG601257AG601258
length738968
length of high quality
(start - end)		669 (55 - 723)---
definitionCHROMAT_FILE: MSMg01no533_e20.b1 PHD_FILE: MSMg01no533_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:28 2005CHROMAT_FILE: MSMg01no533_e20.g1 PHD_FILE: MSMg01no533_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTGACCGTTGAGACAAAGTCCCATGGCTGGTTGGCC
AGGACAGGAATTGAGTCTCACAATTCTCAAGGGTTAGCGTTAGAAACCAA
GGAAGGTTTGGTCTCATGAGGTGTTTCTCCTCAGCTTTGAGGTGGCCAGC
TCCTCCATTGCGGCTACATAGCCTATATACTGTGTCTAGAGTATCTCTCC
TAAAGACATTAGCAACAATGGGACTAGGGCCAGTGAGCTCTTTTAAGAGC
TTTCCTTCAAATGTAGTCACTTTTGGGGTGTATGAGGAGCCTGTGAAGTT
CAATGTAGAGATTGGGGTGAGGCAAGAATCCAGGATAATAAAGGAGTCAG
GTGTGGTCAACACTTGACGTCCTAGAATCTCCAGAAACAAAGAAGAATCA
TGAAGTTAAGCTTGGTCTTCAAGTTGAATACCAAACCTGTCTGAGCTACA
TAGCAAGACCTTGTCTCAAAGCAGAGGGCTGGAGAGACGGCTCGGTCATT
AAAGCAGTTGCCACTAAAGGATAAGGCCAGGGGTTCTGATACTTGACACA
CATAAAGCTAGGGAGGGGCCTCAGGTAAAAGCTAGATGGTGGAAGAAGAG
AACCGGTGTGGTGTGCTATGAGATGCGCATGCCCACAGACACACCAAGTG
TAATTATAGTGAAATAACAAACAGCCAGGTGGCCATTG

CTGCAAACAAGTGAAGTATCGGGNAGGNGATACCGGCTACAATCACCNAG
AGGGGTGGNAANANNAANGTTATCANAAAAAGAGGGGGGGNNNGCNNANG
GNGGGGGGGGGGGGAGGGAANAAGAGCGAGAAAAAGCAGCCCAGAAGTAG
AGGAGGCACGTTGATCAAACATTGAACTAATATAAGCATAACAGGAGAGG
GGGAACTACACTTTACTAGATTCATTTTGACGTCCCCGCTCTCTCTTGCG
GAGCAGAGGTCTGCACTTACGATTTGACAAATTAATGTGTCGTTATATTC
GTCCCGCAATGAGACTTTATGTTAACAAACGTTCATGTATTTTTTATTGC
GCATAAACGTAGAAAAGCACAATAGTAGTTTGTTTCTATATACATGATCA
CCTACCGCCTACATTGTCTAAATTGTTACTCCTTAAATTCTTCATTCCTC
TATTCACATTGACCGCTTGAATGTCACAAATAATAATTAACATCTTGAAC
AAGCGATAAAATTATAAGTAACGAATCGTATGCAAGATGCACCTAAGATA
AGTAATATATACCATAGTTACACTAGAACGATTACTTACTATTTTAACTA
TACAACTACCAATCCTGTAGTTAACAGAGTTCGTGCACATCTTATGTCAT
CTACCTATAAACAACCACACCTATTACCATTATATTACTCCATACGTCTT
TTCACCAATTACCTATAACGCCTTTTCTAATTATTCCCCACACGCTTATT
ACCGCAACATATAATTTCATATTCCATAATACCCACGTCTACCACATTTA
TAACCCATTCATTATTCCATCACCCCCCCGTAGTTCATTATGTACACTTT
CTTCATCCCATCTCCAATTTTAACGATGTACCCTACCATGACTAAGCTGT
CACCACTCATATATATCCCATGTATTTTCTCAACCGCTATTAGAGACCCA
CTTTTTCCTCCCTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no533_e20.b1 MSMg01no533_e20.b1 CHROMAT_FILE:
MSMg01no533_e20.b1 PHD_FILE: MSMg01no533_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:28 2005
         (669 letters)



>mm_chr8_109054994_109056061
          Length = 1068

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%), Gaps = 1/665 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaccgttgagacaaagtcccatggctggttggccaggacaggaattgagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaccgttgagacaaagtcccatggctggttggccaggacaggaattgagtct 264

                                                                       
Query: 65  cacaattctcaagggttagcgttagaaaccaaggaaggtttggtctcatgaggtgtttct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacaattctcaagggttagcgttagaaaccaaggaaggtttggtctcatgaggtgtttct 324

                                                                       
Query: 125 cctcagctttgaggtggccagctcctccattgcggctacatagcctatatactgtgtcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctcagctttgaggtggccagctcctccattgcggctacatagcctatatactgtgtcta 384

                                                                       
Query: 185 gagtatctctcctaaagacattagcaacaatgggactagggccagtgagctcttttaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagtatctctcctaaagacattagcaacaatgggactagggccagtgagctcttttaaga 444

                                                                       
Query: 245 gctttccttcaaatgtagtcacttttggggtgtatgaggagcctgtgaagttcaatgtag 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 gctttccttcaaatgtagtcacttt-ggggtgtatgaggagcctgtgaagttcaatgtag 503

                                                                       
Query: 305 agattggggtgaggcaagaatccaggataataaaggagtcaggtgtggtcaacacttgac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agattggggtgaggcaagaatccaggataataaaggagtcaggtgtggtcaacacttgac 563

                                                                       
Query: 365 gtcctagaatctccagaaacaaagaagaatcatgaagttaagcttggtcttcaagttgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcctagaatctccagaaacaaagaagaatcatgaagttaagcttggtcttcaagttgaa 623

                                                                       
Query: 425 taccaaacctgtctgagctacatagcaagaccttgtctcaaagcagagggctggagagac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taccaaacctgtctgagctacatagcaagaccttgtctcaaagcagagggctggagagac 683

                                                                       
Query: 485 ggctcggtcattaaagcagttgccactaaaggataaggccaggggttctgatacttgaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggctcggtcattaaagcagttgccactaaaggataaggccaggggttctgatacttgaca 743

                                                                       
Query: 545 cacataaagctagggaggggcctcaggtaaaagctagatggtggaagaagagaaccggtg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cacataaagctagggaggggcctcaggtaaaagctagatggtggaagaagagaaccggtg 803

                                                                       
Query: 605 tggtgtgctatgagatgcgcatgcccacagacacaccaagtgtaattatagtgaaataac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tggtgtgctatgagatgcgcatgcccacagacacaccaagtgtaattatagtgaaataac 863

                
Query: 665 aaaca 669
            ||||
Sbjct: 864 gaaca 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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