BAC Information

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BAC

Clone NameMSMg01-534I03
Chromosome8 (Build37)
Map Location 14,919,918 - 14,920,560
singlet/doubletsinglet
Overlap geneArhgef10
Upstream geneFbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8
Downstream gene2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534I03.T7 (MSMg01no534_i03.b1)MSMg01-534I03.TJ (MSMg01no534_i03.g1)
ACCAG602176AG602177
length658726
length of high quality
(start - end)
54 (92 - 145)645 (71 - 715)
definitionCHROMAT_FILE: MSMg01no534_i03.b1 PHD_FILE: MSMg01no534_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:03 2005CHROMAT_FILE: MSMg01no534_i03.g1 PHD_FILE: MSMg01no534_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTATCATCTTCCACCTCTGTCTCTTTTGTTTTTGAAATATTXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCGGAGAGGGAATGCCGCGGAATTC
AGTACTGGCTACTCTTCCCGCAGCTATACAAGGCGTTCCACACTGTCTCT
TAAGCCTTACTGAACTTCCTGGTTTACGAACCTGGGTTCTCTACCCTGTC
CAGCATTAAGGCAGACATTTGTTGGGGTTATCCAGCCCCCATGGTGGAAA
CCCATTTCGTAAAAGGATCCCCTGAAATTTTTTTGTTTTTTTAGGTTTTG
GCCCTTTTTTGGAGGAACCTTTTTCTTTTATTTGAGAAACCCTACCTTTC
TTATAAACCCTTTATACATGGGATATAAAAAATTTTTTTTTAAAACATTT
TTTCCTCTTTGAAAAAAAAAAAATCGTTTTTCAAAAAACCCCGGGCTCCA
CTTTTGGGAAAATATAATTTTTTTTGGAGAAAAATTTTTTAAAAAAAACT
TCTTTTTTTTCCGGGGGGTTTTATAGTCTCCTATAATAACCCCTCTTGGG
TTCCCAAAAACAATGGTATTTTTTTCCCCTGGGCGGTTAAATTAATTTAT
TTCTATATTAAGAAAAATTCACCTCCGCTTTCTTAAAAAAAAAAAAAAAC
TTTCTTTG
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGCAGTGTGCATTCTGCACACGGTCCCGGA
GGCCCCCTGACAGAGGTACAAGTCAAAAAGGGGGGAGGCATGCAGGCTAG
GTCCCACTGCACTTGGAGATCAGCATACCAGGTCGGTGCTTTACCGTTAA
ACAGTACTTTTCCTTGGAGCCAGCCTGGCGGTCTGGGATGCCCTGATGTA
TGCCCAAATTGTGACCACAATTGACACAAACCAACAATGTCTCAAAGACT
CATGTCATCTAAACAAAACACAAACTGTATACTGTTATCTAAACATCTGT
GCAGCTCTAACTGCATGTTGACTCGGCAATGCCTTTGCCAGTGTTGTTCA
GGAGACTGGACATTATGTTAAAAAAAAAATACAAAACAAAACAAAACGGC
AGAATTCGTCATTCAGAGGGTAGCAGTCGCCAGACGGGCTCTGGCCATCT
AAACGGACAGCCTATGCCCTTGAAGGCTTCTTGGGCAGCCTCTGCAGACA
AGCCTTTCCCTGGCATTCTTGAGGGTCCCTTAGAAGAGTATGCCAGCCCT
TGGTTGCCCGTGGCCTGTAAGAACAGCCATGTAAGCCTAGAACTTAGACT
TGCTGGACTAGTCCAAGGAGGTACAGAACAGAAATAAGAAGTTCATTACT
TCAGCAGGGAACAAGCCGGATTCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_i03.g1 MSMg01no534_i03.g1 CHROMAT_FILE:
MSMg01no534_i03.g1 PHD_FILE: MSMg01no534_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:03 2005
         (645 letters)



>mm_chr8_14919718_14920760
          Length = 1043

 Score = 1174 bits (607), Expect = 0.0
 Identities = 635/645 (98%), Gaps = 2/645 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtgtgcattctgcacacggtcccggaggccccctgacagaggtacaagtcaaaaag 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  
Sbjct: 843 agcagtgtgcattctgcacacggtccccgaggccccctgacagaggtacaagtcaaaa-- 786

                                                                       
Query: 61  gggggaggcatgcaggctaggtcccactgcacttggagatcagcataccaggtcggtgct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 785 gggggaggcatgcaggctaggtcccactgcacttggagatcagcataccaggacggtgct 726

                                                                       
Query: 121 ttaccgttaaacagtacttttccttggagccagcctggcggtctgggatgccctgatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 725 ttaccgttaaacagtacttttccttggagccagcctggcggtctgggatgccctggtgta 666

                                                                       
Query: 181 tgcccaaattgtgaccacaattgacacaaaccaacaatgtctcaaagactcatgtcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgcccaaattgtgaccacaattgacacaaaccaacaatgtctcaaagactcatgtcatct 606

                                                                       
Query: 241 aaacaaaacacaaactgtatactgttatctaaacatctgtgcagctctaactgcatgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aaacaaaacacaaactgtatactgttatctaaacatctgtgcagctctaactgcatgttg 546

                                                                       
Query: 301 actcggcaatgcctttgccagtgttgttcaggagactggacattatgttaaaaaaaaaat 360
           ||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 545 actgggcaatgcctttgctagtgttgttcaggagactggtcattatgttaaaaaaaaaat 486

                                                                       
Query: 361 acaaaacaaaacaaaacggcagaattcgtcattcagagggtagcagtcgccagacgggct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 acaaaacaaaacaaaacggcagaattcgtcattcagagggtagcagtcgccagacgggct 426

                                                                       
Query: 421 ctggccatctaaacggacagcctatgcccttgaaggcttcttgggcagcctctgcagaca 480
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 425 ctggccatctaaacggacagcctatgcccatgaaggcttcttgggcagcctctgcagaca 366

                                                                       
Query: 481 agcctttccctggcattcttgagggtcccttagaagagtatgccagcccttggttgcccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agcctttccctggcattcttgagggtcccttagaagagtatgccagcccttggttgcccg 306

                                                                       
Query: 541 tggcctgtaagaacagccatgtaagcctagaacttagacttgctggactagtccaaggag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggcctgtaagaacagccatgtaagcctagaacttagacttgctggactagtccaaggag 246

                                                        
Query: 601 gtacagaacagaaataagaagttcattacttcagcagggaacaag 645
           ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 245 gtacagaacagaaataagaagttcattacctcagcagggaacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1043
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1033
Effective search space:   655955
Effective search space used:   655955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)