Query= MSMg01no535_b22.b1 MSMg01no535_b22.b1 CHROMAT_FILE:
MSMg01no535_b22.b1 PHD_FILE: MSMg01no535_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:50 2005
(552 letters)
>mm_chr8_114939481_114940432
Length = 952
Score = 901 bits (466), Expect = 0.0
Identities = 538/574 (93%), Gaps = 23/574 (4%)
Strand = Plus / Minus
Query: 1 ggctatacagagaaaccctggtttggaaaaaccaaaaaaa--aaagaaaaaagaaagaaa 58
||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 670 ggctatacagagaaaccct-gtttggaaaaaccaaaaaaaagaaaaaaaaaagaaagaag 612
Query: 59 gaaagaaagaaagaaagaaa-------------ga---aagaaagaaagaaagaaagaaa 102
|||||||||||||||||||| || ||| ||| ||| ||| ||||||
Sbjct: 611 gaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaa 552
Query: 103 gaaagaaagaaagaaagaaagaaagaaagaaaga----aagaaagaaagaagatgtgcat 158
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 551 gaaagaaagaaagaaagaaagaaagaaagaaagaagggaaggaagaaagaagatgtgcat 492
Query: 159 tgctcttgctctgtgtgttcatgcatgttcatgtgtgttcatgtgtgtgtacatagactt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tgctcttgctctgtgtgttcatgcatgttcatgtgtgttcatgtgtgtgtacatagactt 432
Query: 219 gtgtatgtatgcggaggtcagagaacaaaccccaggacagctattcagcgtcattcaaga 278
|||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct: 431 gtgtatgtatgcggaggtcagagagcaaaccgcactacagctattcagcgtcattcaaga 372
Query: 279 agacagaccctctcactgcccttgtccagcaagccctaggaactggcccatctcttccat 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agacagaccctctcactgcccttgtccagcaagccctaggaactggcccatctcttccat 312
Query: 339 ttccctagcactcagtctaagattccaggcatgctctaccatgcctagcttctggggatc 398
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttccctagcactcagactaagattccaggcatgctctaccatgcctagcttctggggatc 252
Query: 399 aaacccaggtcctgatgcctacagggcaagcacactaacaactgcactctttccctagcc 458
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 251 aaacccaggtcctgatgcctacagggcaagcacactagcaactgcactctttccctagcc 192
Query: 459 ttttgttattaaaaagtaaatctagaaattgaaaacgcaagtttcaaggatgtctggaac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ttttgttattaaaaagtaaatctagaaattgaaaacgcaagtttcaaggatgtctggaac 132
Query: 519 ctaaaattcccagacatgaagtccagcatagctc 552
||||||||||||||||||||||||||||||||||
Sbjct: 131 ctaaaattcccagacatgaagtccagcatagctc 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_b22.g1 MSMg01no535_b22.g1 CHROMAT_FILE:
MSMg01no535_b22.g1 PHD_FILE: MSMg01no535_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:50 2005
(540 letters)
>mm_chr8_114798052_114798992
Length = 941
Score = 1015 bits (525), Expect = 0.0
Identities = 537/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 1 cccaaaccggatttagtagcatactcaactaccaacactgtaaaccaccaaaggactctc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaaaccggatttaatagcatactcaactaccaacactgtaaaccaccaaaggactctc 260
Query: 61 cgtgggccagatcatctgtgaagtaggaagaaactctaacaaggggctagtggaggatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgggccagatcatctgtgaagtaggaagaaactctaacaaggggctagtggaggatat 320
Query: 121 gtgtgggatacaggtgtgagattaggagagttctaaagaggggtgatgaccactctttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgggatacaggtgtgagattaggagagttctaaagaggggtgatgaccactctttta 380
Query: 181 gagtgtttctctgagaagctgagctgtccttcagttcttaaagcttctgattggggtctc 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtgtttctctgagaagctgagctgtccttcagttcttaaagcttctgattggggtctc 440
Query: 241 atgtcataga-ggtttttttttccctctgattattttatgatttatggatccaactgtca 299
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtcatagagggttttttttcccctctgattattttatgatttatggatccaactgtca 500
Query: 300 cataccgcaaaaaggagagtgaaaggggttgaaaatgtcttagaatttatgaacatcaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cataccgcaaaaaggagagtgaaaggggttgaaaatgtcttagaatttatgaacatcaaa 560
Query: 360 gattttagaagttggtcaaagatttaaaagtaatttttagaatcagctgcaacttattat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattttagaagttggtcaaagatttaaaagtaatttttagaatcagctgcaacttattat 620
Query: 420 ctggatgaatatgcttctggctctgggaaagattagttagttcattggccacgtagcttg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggatgaatatgcttctggctctgggaaagattagttagttcattggccacgtagcttg 680
Query: 480 gctgtccctgggctctagtcagaaatctgtagagtcatattctagagcagaggttttcaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgtccctgggctctagtcagaaatctgtagagtcatattctagagcagaggttttcaa 740
Query: 540 c 540
|
Sbjct: 741 c 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
