BAC Information

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BAC

Clone NameMSMg01-536A09
Chromosome8 (Build37)
Map Location 58,261,363 - 58,261,901
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356, LOC664916
Downstream geneAdam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-536A09.T7 (MSMg01no536_a09.b1)MSMg01-536A09.TJ (MSMg01no536_a09.g1)
ACCAG603336AG603337
length750750
length of high quality
(start - end)
635 (113 - 747)594 (157 - 750)
definitionCHROMAT_FILE: MSMg01no536_a09.b1 PHD_FILE: MSMg01no536_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:00 2005CHROMAT_FILE: MSMg01no536_a09.g1 PHD_FILE: MSMg01no536_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:14:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCAGTGAGTGTACTTTAGCGTGGTACCATTTAATGGAGTTCAG
TTCAAATGCAGCTTTCCCATGACAGTTTTACAGGGACAGCTTTCAAGTGA
AGGCAGAATGAACAATAAAATGAGAAGGAGCCAGAAGATTAGAACACATT
TCCAGAGTTAGTCTGAAGTTAAGCACAGCAATTCAGTCAGGAGCCAAGGG
AAGCCAGTTTGAATCAGTCATCATGGAAATGCTTTGAGTCAAAACAGCTA
AGTTGACCCAGCCAGAATCAGCTCATAAAGAGTTAGAAAGGGTGAGTTTG
TTCAACAATAAGCCGCTGAGATGACAATTACATCTCACAAGTAAAAGTTA
CTTTTACAACTGTTTTTTTCATACATGTATGCTTTAAAATTATTTTTCTT
TTACATATACATGTTTCTAATAGAACACCAGAACCCTTGAAATTTTTGTT
AAGTACTAACTTTTATGTGGATATTGTAAAATCTCTATTTACTTTTATTC
TTTCATTATTACTTTTTGTGCATCAAATCTTTTAGTCTGCCTTTCAGTAT
TGATAATCAATAAACTATACATCAGAATAAGTATTAGAGAACCAGATTTG
GATTTTGTAATTCATTCTATAATTACCAATAAATTTGGTAAAATGCAAAT
GCAATGAATTTGCTTGACATTTTTTTATTATTTAATGGCTCCTCATTTTC

CCTCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGATACCGAATGGC
AGAGAAGCACCCTGAAAAATGCTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAG
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAAGATACACAAGATATAAGATACAATTT
CCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no536_a09.b1 MSMg01no536_a09.b1 CHROMAT_FILE:
MSMg01no536_a09.b1 PHD_FILE: MSMg01no536_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:00 2005
         (635 letters)



>mm_chr8_58260867_58261901
          Length = 1035

 Score = 1035 bits (535), Expect = 0.0
 Identities = 538/539 (99%)
 Strand = Plus / Minus

                                                                        
Query: 97   tagtctgaagttaagcacagcaattcagtcaggagccaagggaagccagtttgaatcagt 156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 tagtctgaagttaagcacagcaattcagtcaggagccaagggaagccagtttgaatcagt 976

                                                                        
Query: 157  catcatggaaatgctttgagtcaaaacagctaagttgacccagccagaatcagctcataa 216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 975  catcatggaaatgctttgagtcaaaacagctaagttgacccagccagaatcagctcagaa 916

                                                                        
Query: 217  agagttagaaagggtgagtttgttcaacaataagccgctgagatgacaattacatctcac 276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  agagttagaaagggtgagtttgttcaacaataagccgctgagatgacaattacatctcac 856

                                                                        
Query: 277  aagtaaaagttacttttacaactgtttttttcatacatgtatgctttaaaattatttttc 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  aagtaaaagttacttttacaactgtttttttcatacatgtatgctttaaaattatttttc 796

                                                                        
Query: 337  ttttacatatacatgtttctaatagaacaccagaacccttgaaatttttgttaagtacta 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  ttttacatatacatgtttctaatagaacaccagaacccttgaaatttttgttaagtacta 736

                                                                        
Query: 397  acttttatgtggatattgtaaaatctctatttacttttattctttcattattactttttg 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  acttttatgtggatattgtaaaatctctatttacttttattctttcattattactttttg 676

                                                                        
Query: 457  tgcatcaaatcttttagtctgcctttcagtattgataatcaataaactatacatcagaat 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  tgcatcaaatcttttagtctgcctttcagtattgataatcaataaactatacatcagaat 616

                                                                        
Query: 517  aagtattagagaaccagatttggattttgtaattcattctataattaccaataaatttgg 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  aagtattagagaaccagatttggattttgtaattcattctataattaccaataaatttgg 556

                                                                       
Query: 577  taaaatgcaaatgcaatgaatttgcttgacatttttttattatttaatggctcctcatt 635
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  taaaatgcaaatgcaatgaatttgcttgacatttttttattatttaatggctcctcatt 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)