Query= MSMg01no536_l06.b1 MSMg01no536_l06.b1 CHROMAT_FILE:
MSMg01no536_l06.b1 PHD_FILE: MSMg01no536_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:53 2005
(575 letters)
>mm_chr8_77193756_77194730
Length = 975
Score = 1029 bits (532), Expect = 0.0
Identities = 563/578 (97%), Gaps = 8/578 (1%)
Strand = Plus / Minus
Query: 6 ggaattctatgtaatatatctctttgttctagataataagaaggcttgtctatttgga-- 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ggaattctatgtaacatatctctttgttctagataataagaaggcttgtctatttggagt 802
Query: 64 ------gtgtgtgtgtgtgtgtgtgtacctatgcatgcatgccatttaaaaatttgtatg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 801 gtgtgtgtgtgtgtgtgtgtgtgtgtacctatgcatgcatgccatttaaaaatttgtacg 742
Query: 118 tgagccaggttggtgcttagaggcacttaagatgactgtgtgtttttggttgaattcctt 177
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgagtcaggttggtgtttagaggcacttaagatgactgtgtgtttttggttgaattcctt 682
Query: 178 catacaagctctcattctcagaccccccacctggctgctgctgtttttcttgttatccta 237
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 catacaagctctcattctcagaccccccacctggctgctactgtttttcttgttatccta 622
Query: 238 tggtgcatctggctagagagcctttttagtgaaaatagaacaaattaaaagtttaacaag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgcatctggctagagagcctttttagtgaaaatagaacaaattaaaagtttaacaag 562
Query: 298 atcagataatatttattaaacacccacatttttccttgttaagtcccctttaagccctgt 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 atcagataatatttattaaacacccacatttttccttgttaagtcccctttaatccctgt 502
Query: 358 ttgaggctgttagcttttccccatgctttaatctctattctttctgccttctcttgctgt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgaggctgttagcttttccccatgctttaatctctattctttctgccttctcttgctgt 442
Query: 418 cttcaaccctggagctgaatgactagcataaagcagaggcaagcaaggattccctatggc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcaaccctggagctgaatgactagcataaagcagaggcaagcaaggattccctatggc 382
Query: 478 aatcttttgagctatgcattgtattttccctcacaaaccctcaaaacaagaattcgaggt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatcttttgagctatgcattgtattttccctcacaaaccctcaaaacaagaattcgaggt 322
Query: 538 ttccatatactacattcaatggtattcctgtagaatgt 575
||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ttccatatactacattcaatggtgttcctgtagaatgt 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_l06.g1 MSMg01no536_l06.g1 CHROMAT_FILE:
MSMg01no536_l06.g1 PHD_FILE: MSMg01no536_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:53 2005
(560 letters)
>mm_chr8_77048340_77049300
Length = 961
Score = 1054 bits (545), Expect = 0.0
Identities = 557/561 (99%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 1 tttggattcttcttgggctctcagatcactgccaagccccagagaaagcaagaaggaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggattcttcttgggctctcagatcactgccaagccccagagaaagcaagaaggaatg 260
Query: 61 tcgactggagcagggagtgggagattctcctctctgctctctgcaatgtccccagaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcgactggagcagggagtgggagattctcctctctgctctctgcaatgtccccagaagta 320
Query: 121 tgcagaatagctctggatctcaaacatgagcctctgagtgcttagacagcagaaaaaa-t 179
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgcagaataggtctggatctcaaacatgagcctctgagtgcttagacagcagaaaaaaat 380
Query: 180 gaagacaccatatagatttttccttgaagttctatatgggcaggagcttagaataggagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagacaccatatagatttttccttgaagttctatatgggcaggagcttagaataggagg 440
Query: 240 tgataacagcgatgaacctggtagtcattcctcttttcaggaagaactcctttgactccc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgataacagcgatgaacctggtagtcattcctcttttcaggaagaactcctttgactccc 500
Query: 300 tattccccagttcctactaggacatctcatgaaacagagacctatcataaaaagtaaatc 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 tattccccagttcctactaggacatctcatgaaacagagacctatcatcaaaagtaaatc 560
Query: 360 agttttgatgtggtttaggaggcctcaaggacagtagatgccatgtgagtcgagtcttga 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 agttttgatgtggtttaggaggcctcaaggacagtagatgccatgtgagttgagtcttga 620
Query: 420 atgacacaaatgaggtagccataaagaggcctgtgacagaaataactctaggaagatggc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgacacaaatgaggtagccataaagaggcctgtgacagaaataactctaggaagatggc 680
Query: 480 ccttcaaatacaaaagttctgggtcagaatccaatcatattgactcaagaacataagaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttcaaatacaaaagttctgggtcagaatccaatcatattgactcaagaacataagaaa 740
Query: 540 gctgtccaatataaatgtcat 560
|||||||||||||||||||||
Sbjct: 741 gctgtccaatataaatgtcat 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space: 523050
Effective search space used: 523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
