BAC Information

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BAC

Clone NameMSMg01-537D13
Chromosome8 (Build37)
Map Location 23,362,618 - 23,363,223
singlet/doubletsinglet
Overlap geneThsd1
Upstream geneLOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2
Downstream geneTpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537D13.T7 (MSMg01no537_d13.b1)MSMg01-537D13.TJ (MSMg01no537_d13.g1)
ACCAG604244AG604245
length738738
length of high quality
(start - end)
618 (78 - 695)656 (83 - 738)
definitionCHROMAT_FILE: MSMg01no537_d13.b1 PHD_FILE: MSMg01no537_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:32 2005CHROMAT_FILE: MSMg01no537_d13.g1 PHD_FILE: MSMg01no537_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGGACCATTCTCGAGCTACAGCGTGAGATCTGCCTAC
CCCTACCAAAAAGCAAACAAACAAACAAACAAACAAACAAAAATCTGATA
CCAACAAGATGAATCAACTGGTAGAGTACCCGTTGCCAACCCTGAGCGTC
TGCACTCCATCCTTGGACTCCACATGGATAGGAAAGAACAGATTCTCGAG
ACACTCTCTGTATTTTTTAAAAAATGACTTAAGATGTTAGAATCTTTAGA
CATATTTCTATGTCACTTCCAATATTAAATCCTGTCATCTCACCGGCAAG
TTACTGTCCCAACTACTCCAGCGTCTCAGACACTGCTAAGTACAAAGCCA
GACCAAATACAGAGTACAAAGTACAAAGTACAGAGCAGCAAGCTTCCTCT
GAACAGAATGGTTGGTTCCCAGACAGGCCTGGCTGACAGAGGCTCTGAGG
AGTGACTGAAAGGAAGCAAGAACACCTACCAGCACACTCCTCCAGGGAGC
ATGGAGAGGTCTCTGAGGACATTCCAGAGCAGCTGGGTCTGGAGGGGAAA
GAAGTGACACACAGGCGGCGACGCTCTCGGACAGCATCCCCGCACGTGGT
GCTACACGGGCTCCACGGCTGCCATGGTCCCCAAGTTTCTGCAAGGATAT
AAGTCACGCTTTTAGTGCTAATTCATTTGAGAATCGGG
NNTTCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTAT
ACAGAGAAACCCTGTCTCGAAAAAACAAACAAATAAACAAAAAAAAAAAA
AAGGAAATTGGTACAGCCGCTTTCAAAGTCAGTGTGGAAAACTCCCAAGA
GCTAAAACTACATCTACCCTGTGACCTAGGTATAGCACCCGTTGGCATAT
GCCCAAGGGACTGAGCATCTTACTCTGCAGACACAAGCTCAGTCATGTTC
CCTGCTTCTTTATTCCCAGTAGCTGAGGAGTGGAACTAACTCCAGTGCTC
TGCAGCTGTTTGATTAACATGTGGTACATAAACACAATGAGATCCTATTC
GGCTGAAAAGAAAAATGAGGTCATGAGCTTTGCACGTATATGGATGGAGC
TAGAAGAGACATAGTGAGCAAGGTAACCTGGGCCCAGACAGACAGACAGA
CATCACATGTTCTCTCCCATCGGGGTCTCCTAGCTCCAGATCTCCAGATG
AGAGCATATATTCTGTAATTACAGAATCCAGGAAAGTAAGAAGGGACTAG
GGTGGAAGAGAGACCTAGAGAGGGAAATAGCAAGATAAATAATATAAAGG
GAGAAATGGGAAAAAAAAGGGGGGCTTTGATGGGGCAAAAGGTAGGGGGT
CAACACAGGTGGAGAGGAAGGGGGAGGGACAAATCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_d13.b1 MSMg01no537_d13.b1 CHROMAT_FILE:
MSMg01no537_d13.b1 PHD_FILE: MSMg01no537_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:32 2005
         (618 letters)



>mm_chr8_23362247_23363264
          Length = 1018

 Score = 1093 bits (565), Expect = 0.0
 Identities = 598/611 (97%), Gaps = 6/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gtgagatctgcctacccctaccaaaaagcaaacaaacaaacaaacaaacaaacaaaaatc 68
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 977 gtgagatctgcctacccctaccaaaaag----caaacaaacaaacaaacaaacaaaaatc 922

                                                                       
Query: 69  tgataccaacaagatgaatcaactggtagagtacccgttgccaaccctgagcgtctgcac 128
           |||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 921 tgataccagcatgatgaatcaactggtagagtacccgttgccaaccctgagtgtctgcac 862

                                                                       
Query: 129 tccatccttggactccacatggataggaaagaacagattctcgagacactctctgtattt 188
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 861 tccatccttggactccacatggataggaaaggacagattctcgagacactctctgtattt 802

                                                                       
Query: 189 tttaaaaaatgacttaagatgttagaatctttagacatatttctatgtcacttccaatat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttaaaaaatgacttaagatgttagaatctttagacatatttctatgtcacttccaatat 742

                                                                       
Query: 249 taaatcctgtcatctcaccggcaagttactgtcccaactactccagcgtctcagacactg 308
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaatcctgtcatctcactggcaagttactgtcccaactactccagcgtctcagacactg 682

                                                                       
Query: 309 ctaagtacaaagccagaccaaatacag-agtacaaagtacaaagtacagagcagcaagct 367
           ||||||||||||||||||||| ||||| | |||||||||| |||||||||||||||||||
Sbjct: 681 ctaagtacaaagccagaccaagtacagca-tacaaagtaccaagtacagagcagcaagct 623

                                                                       
Query: 368 tcctctgaacagaatggttggttcccagacaggcctggctgacagaggctctgaggagtg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcctctgaacagaatggttggttcccagacaggcctggctgacagaggctctgaggagtg 563

                                                                       
Query: 428 actgaaaggaagcaagaacacctaccagcacactcctccagggagcatggagaggtctct 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 actgaaaggaagcaagaacacctaccagcacactcctccagggagcatggagaggtctct 503

                                                                       
Query: 488 gaggacattccagagcagctgggtctggaggggaaagaagtgacacacaggcggcgacgc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaggacattccagagcagctgggtctggaggggaaagaagtgacacacaggcggcgacgc 443

                                                                       
Query: 548 tctcggacagcatccccgcacgtggtgctacacgggctccacggctgccatggtccccaa 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctcggacagcatccccgcacgtggtgctacacgggctccacggctgccatggtccccaa 383

                      
Query: 608 gtttctgcaag 618
           |||||||||||
Sbjct: 382 gtttctgcaag 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)