Query= MSMg01no537_g14.b1 MSMg01no537_g14.b1 CHROMAT_FILE:
MSMg01no537_g14.b1 PHD_FILE: MSMg01no537_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:46 2005
(603 letters)
>mm_chr8_112247283_112248285
Length = 1003
Score = 1100 bits (569), Expect = 0.0
Identities = 590/599 (98%), Gaps = 4/599 (0%)
Strand = Plus / Minus
Query: 5 gaattccagcaggttacactggaggactacaggcagtgtcctttccttcagcactggagg 64
||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 700 gaattccagcagggtatactggaggactacaggcaatgtcctttccttcagcactggagg 641
Query: 65 gaccttcactgtggacttggggtacggattccatattaagtacttgagggagtttctcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gaccttcactgtggacttggggtacggattccatattaagtacttgagggagtttctcac 581
Query: 125 tgagaagtaaagatgtttgatggttagtatctccctgaggcaagtaggtcttactcctta 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 580 tgagaagtaaagatgtttgatggttagtatctccctgaggcaagaaggtcttactcctta 521
Query: 185 acagctaggcagactgtcccaagtctactgtttgatttgaagggttggaagaccccttct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acagctaggcagactgtcccaagtctactgtttgatttgaagggttggaagaccccttct 461
Query: 245 cttctttggactagggtacctactatgttttagggcccaccttgaattagcaactgagct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cttctttggactagggtacctactatgttttagggcccaccttgaattagcaactgagct 401
Query: 305 acccaccatagaaacctacctagaataaccctgcaaggctaagtcagaatggcagtttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acccaccatagaaacctacctagaataaccctgcaaggctaagtcagaatggcagtttct 341
Query: 365 taaggagctgtgcaggtctaagcctggtgtatgaatgaaggggcctggaggtggacactt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taaggagctgtgcaggtctaagcctggtgtatgaatgaaggggcctggaggtggacactt 281
Query: 425 ccttcacacaggtacaattaattcactgccttaccacctcctacctgacactgcccagaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ccttcacacaggtacaattaattcactgccttaccacctcctacctgacactgcccagaa 221
Query: 485 ggaaaaatagcttgtcgccagacagtggtggcgcacccctttaatcccagcacttgggag 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 220 ggaaaaatagcttgtcgccagacagtggtggcgcacccctttaatcccagcactcgggag 161
Query: 545 gcagaggcaggcaggcagatctctgagtttgaagccagcctggtctacagagtgagttc 603
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gcagaggcaggcag----atctctgagtttgaagccagcctggtctacagagtgagttc 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_g14.g1 MSMg01no537_g14.g1 CHROMAT_FILE:
MSMg01no537_g14.g1 PHD_FILE: MSMg01no537_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:46 2005
(597 letters)
>mm_chr8_112155939_112156935
Length = 997
Score = 1100 bits (569), Expect = 0.0
Identities = 590/597 (98%)
Strand = Plus / Plus
Query: 1 cagtctttaatttataactgctgggctggtgagaaggctcagcggttaagagcaccgact 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 cagtctttaatttgtaactgctgggctggtgagaaggctcagcggttaagagcacctact 260
Query: 61 actcttccaaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatcca 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcttccgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatcca 320
Query: 121 taacaagatctaactccttcttctggagtgtctgaagatagctacagggtagtcacatat 180
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacaagatctaactctttcttccggagtgtctgaagatagctacagggtagtcacatat 380
Query: 181 aataaataaataaatctttaaaaaaattataactgctaccttgtaatccattgtggggct 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 aataaataaataaatctttaaaaaaaatataactgctaccttgtaatccattgtggggct 440
Query: 241 cctgtgtgaacaatttggctggcagttggaagaactggaatttgcttcctctgcaggtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgtgtgaacaatttggctggcagttggaagaactggaatttgcttcctctgcaggtga 500
Query: 301 caggtctggctttcaacccttttaagactttggatgacaagaacattgttggaagcattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtctggctttcaacccttttaagactttggatgacaagaacattgttggaagcattg 560
Query: 361 gaaatgtgcagctgagctctgcttatcagtcgatcagagtccacgacttaatagaagata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatgtgcagctgagctctgcttatcagtcgatcagagtccacgacttaatagaagata 620
Query: 421 ttgaggtacaagtttctatggaaacaggccgtgctgggatagaggatgggaacaagtatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaggtacaagtttctatggaaacaggccgtgctgggatagaggatgggaacaagtatc 680
Query: 481 tctatggaaacaggccgcgctgggatacaggatgggaagatacaacaacttggcattttc 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctatggaaacaggccgtgctgggatacaggatgggaagatacaacaacttggcattttc 740
Query: 541 aatacatgtcagagtgaagtacgtggcacatgtgtttaatcccagcacttgggaggc 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatacatgtcagagtgaagtacgtggcacatgtgtttaatcccagcacttgggaggc 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
