Query= MSMg01no537_i07.b1 MSMg01no537_i07.b1 CHROMAT_FILE:
MSMg01no537_i07.b1 PHD_FILE: MSMg01no537_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:54 2005
(533 letters)
>mm_chr8_47792323_47793257
Length = 935
Score = 1006 bits (520), Expect = 0.0
Identities = 531/536 (99%), Gaps = 4/536 (0%)
Strand = Plus / Plus
Query: 1 gcccaacaatctgatgttaaaaaga---gataaaggtattattgggggaaaactgtatag 57
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 201 gcccaacaatctgatgttaaaaagaagagataaaggtattattgggg-aaaactgtatag 259
Query: 58 atctcatgaggacagatcttactaatgagaaaatacaacccatcaacccgtcaaaggagc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atctcatgaggacagatcttactaatgagaaaatacaacccatcaacccgtcaaaggagc 319
Query: 118 agtgtacaatgagggtgtgggctttatctggggaaaagaagatgcgctggtcctttaaaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtgtacaatgagggtgtgggctttatctggggaaaagaagatgcgctggtcctttaaaa 379
Query: 178 tgatctttagggcacaccaacagatgacaagaaacaacgtcatgattatcttgagaggtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatctttagggcacaccaacagatgacaagaaacaacgtcatgattatcttgagaggtg 439
Query: 238 tggaaaagatatttgactaacgttctcatcattttgtaatgtaaattggcggtagacaat 297
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggaaaagatatttgacaaacgttctcatcattttgtaatgtaaattggcggtagacaat 499
Query: 298 aatgtccataaagttatatttttttaaactctataagcaaccttcaggtaactacagaca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatgtccataaagttatatttttttaaactctataagcaaccttcaggtaactacagaca 559
Query: 358 taattttgaaagattcaatgtgacatttctctctctgtgactctctctctctttgtgtct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taattttgaaagattcaatgtgacatttctctctctgtgactctctctctctttgtgtct 619
Query: 418 ctctgtgtctctgtctgtctctgtgtctctgtctttctctgtctctctgtgtctctgtct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctctgtgtctctgtctgtctctgtgtctctgtctttctctgtctctctgtgtctctgtct 679
Query: 478 gtctgtctctgtgtctctgtctgtctttctctgtctctctgtgactctgtctctgt 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtctgtctctgtgtctctgtctgtctttctctgtctctctgtgactctgtctctgt 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 935
Length adjustment: 10
Effective length of query: 523
Effective length of database: 925
Effective search space: 483775
Effective search space used: 483775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_i07.g1 MSMg01no537_i07.g1 CHROMAT_FILE:
MSMg01no537_i07.g1 PHD_FILE: MSMg01no537_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:54 2005
(575 letters)
>mm_chr8_47971091_47972068
Length = 978
Score = 1058 bits (547), Expect = 0.0
Identities = 570/579 (98%), Gaps = 5/579 (0%)
Strand = Plus / Minus
Query: 1 cctgtgtttgagaaggccacaccaaccccaattttctcataagtccaattattccttcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cctgtgtttgagaaggccacaccaaccccaattttctcataagtccaattattccttcat 719
Query: 61 gcatgattttgcagaagtgaaacagggagaagaggtggggtggttgaatacatgctgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gcatgattttgcagaagtgaaacagggagaagaggtggggtggttgaatacatgctgtga 659
Query: 121 tagtagaaaatgatatttggcaatgtgtgccttactgacctctgtgcttcctctcccct- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tagtagaaaatgatatttggcaatgtgtgccttactgacctctgtgcttcctctcccctc 599
Query: 180 --ccccccacttcttgtttcatttagcttgggcatttgtgttggtttcctaatggggcca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ccccccccacttcttgtttcatttagcttgggcatttgtgttggtttcctaatggggcca 539
Query: 238 taacaaaataggaggatcttagagacttgaagcaacataggatttattgggcttaccgtc 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 538 taacaaaataggaggatcttagagacttgaagcaacataggatttattgggcttactgtc 479
Query: 298 caaaggtagacatcaatggcaggctggtttgtaagcaag-actactttctttcctcctct 356
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 478 caaaggtagacatcaatggcaggctggtttgtaagc-agaactactttctttcctcctct 420
Query: 357 tccaactcctagagaatctatttatgtcttcacccttgtgcaagtgctatccttgctgtg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tccaactcctagagaatctatttatgtcttcacccttgtgcaagtgctatccttgctgtg 360
Query: 417 tgagctaatagctaatgaaagtgactcaagggaggaaggacttattttgactcatgatta 476
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 359 tgagctaatagctaatgaaagtgactcaagggaggaaggatttattttgactcatgatta 300
Query: 477 tagatggttctgtccatggtctcttggctccatgtccttgggcagcctcgtgtggtggca 536
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 299 tagatggttctgtccatggtctcttggctccatgtccttgggcagaatcgtgtggtggca 240
Query: 537 ggagcgtgtggaggagactattcatcttatggaaggcaa 575
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggagcgtgtggaggagactattcatcttatggaaggcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 978
Length adjustment: 10
Effective length of query: 565
Effective length of database: 968
Effective search space: 546920
Effective search space used: 546920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
