Query= MSMg01no537_j04.b1 MSMg01no537_j04.b1 CHROMAT_FILE:
MSMg01no537_j04.b1 PHD_FILE: MSMg01no537_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:58 2005
(695 letters)
>mm_chr8_78001687_78002782
Length = 1096
Score = 1208 bits (625), Expect = 0.0
Identities = 676/693 (97%), Gaps = 2/693 (0%)
Strand = Plus / Plus
Query: 5 gaattctccgcttatcctttaactcctaatttaaagaccaggtcatcattgcttagttac 64
||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccgcgtagcctttaactcttaatttaaagaccaggtcatcattgcttagttac 264
Query: 65 catctcaacttatctcatacgagttgttaaactcaccgagcactttaggatttcctgcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catctcaacttatctcatacgagttgttaaactcaccgagcactttaggatttcctgcat 324
Query: 125 cagagaacatgttttgaatttatcttgtttgcattgaattcatagaagttgtaagtgatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagagaacatgttttgaatttatcttgtttgcattgaattcatagaagttgtaagtgatt 384
Query: 185 ttattgttaaaactgtaattaaagcatcattaa-tttttgtattcttcagatttttcaag 243
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 385 ttattgttaaaactgtaattaaagcatcattaattttttgtattcttcagattttttaag 444
Query: 244 gaaacacactcagtaaaacactcacaaatatgtatagataaaaaataggtttgctatagg 303
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 gaaacacactcagtaaaacactcacaagtatgtatagataaaaaataggtttgctatagg 504
Query: 304 aatttattctcaatattctagaggttaggggaaaaaaatcacagatccaagaatgccaaa 363
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 505 aatttattctcaatattctagaggttaggggataaaaatcacagatccaagaaagccaaa 564
Query: 364 gatgtgggtgtgttttaatcagatcaaaaagtctgggcagggaaggcaggaacagtacac 423
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 565 gatgtgggtgtgttttaatcagatcaaaatgtctgagcagggaaggcaggaacagtacac 624
Query: 424 accctgttcaagtatagaagtcctggaggggaacaagttcgagccatgtgcagtgacatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accctgttcaagtatagaagtcctggaggggaacaagttcgagccatgtgcagtgacatg 684
Query: 484 cctgagaatgccatagggaacatgtcatgttaggttaaaagaactgaaaaatttaaa-gc 542
||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct: 685 cctgagaatgcaatagggaacatgtcatgttaggttaaaggaactgaaaaatataaaagc 744
Query: 543 ataaatttgcttttcctccactttttttgttctgagctctctacagactgaatattgcct 602
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct: 745 ataaatttgcttttcctctacattttttgttctgagctctctacagactgaataatgcct 804
Query: 603 actgacttttggtgagctcaaatcttccttattgaatttattgatccataccctcatgcc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 actgacttttggtgagctcaaatcttccttattgaatttattgatccataccctcatgcc 864
Query: 663 ttctggaaataccctcatataacattacattat 695
|||||||||||||||||||||||||||||||||
Sbjct: 865 ttctggaaataccctcatataacattacattat 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1096
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1086
Effective search space: 743910
Effective search space used: 743910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_j04.g1 MSMg01no537_j04.g1 CHROMAT_FILE:
MSMg01no537_j04.g1 PHD_FILE: MSMg01no537_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:58 2005
(617 letters)
>mm_chr8_78140516_78141533
Length = 1018
Score = 712 bits (368), Expect = 0.0
Identities = 383/388 (98%), Gaps = 1/388 (0%)
Strand = Plus / Minus
Query: 1 cttcatcccatacttaacctgttacttctgaccaggcttaagtttcatcatttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttcatcccatacttaacctgttacttctgaccaggcttaagtttcatcatttttttttt 329
Query: 61 -aatttctatcttctctggccactcctgaactcacattcattttatagcccaagttaagc 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aaatttctatcttctctggccactcctgaactcacattcattttatagcccaagttaagc 269
Query: 120 tctgtcaggacaccatccatgcctgtcttcctgcttcctccacactaaaggaatacatct 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctgtcaggacaccatccatgcctgtcttcctgcttcctccacactaaaggaatacatca 209
Query: 180 tctgtaaatgtggtgatttgaataaaattggtcctcacaggttcatgtatttcaaagctt 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 208 tctgtaaatgtggtgatttgaataaaatttgtcctcacaggttcatgtatttcaaagctt 149
Query: 240 agtcaccagggagtggaatcatttaaaaggattggaagaacttgaaggtttggcccagtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 148 agtcaccagggagtggaatcatttaaaaggattggaagaacttgaaggtttggtccagtt 89
Query: 300 ggaggttgtttgtcactggggtgagctttgaagcttcaaaagcccatgctaggcccagtc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 88 ggaggttgtttgtcactggggtgagctttgaagcttcaaaagcccatgctaggctcagtc 29
Query: 360 actctttctgcctagagatcaagatgta 387
||||||||||||||||||||||||||||
Sbjct: 28 actctttctgcctagagatcaagatgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
