Query= MSMg01no539_k21.b1 MSMg01no539_k21.b1 CHROMAT_FILE:
MSMg01no539_k21.b1 PHD_FILE: MSMg01no539_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:43 2005
(519 letters)
>mm_chr8_130419187_130420104
Length = 918
Score = 888 bits (459), Expect = 0.0
Identities = 501/515 (97%), Gaps = 1/515 (0%)
Strand = Plus / Plus
Query: 5 aaacatttgaagaatttttaaaatgctaattttttttttaattgcatggtatatgtggca 64
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 aaacatttgaagaattttttaaatgctaattttttttt-aattgcatggtatatgtggca 263
Query: 65 ggagctgggtgctgaggcagggtgtcagagaacaacttcctggagttgtttctctccctc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagctgggtgctgaggcagggtgtcagagaacaacttcctggagttgtttctctccctc 323
Query: 125 tgggtccttcctattcactatccatcttgttggctcttgggtaacttttgaatgtctttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgggtccttcctattcactatccatcttgttggctcttgggtaacttttgaatgtctttt 383
Query: 185 tccaagagtgtcacttcccaattttctcctatccaattgacttggtcatcttgccaatca 244
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 tctaagagtgtcacttcccaattttcttttatccaattgacttggtcatcttgccaatca 443
Query: 245 cttttatttctttccagaggatctttgcggagtgaagcatagacatatcatgttgatcct 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 cttttatttctttccagaggatctttgcagagtgaagcatagacatatcatgttgatcct 503
Query: 305 taaatacacaagagtgtgctttctaagctgagtattgtggcacattcctgtaatcttaga 364
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 taaatacacaagagtgtgctttctaaactgagtattgtggcacattcctgtaatcttaga 563
Query: 365 acccatgagctcctatcaactcccagtccataatgaaataaaaattaatgcaattgtttt 424
|||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 acccttgagctcgtatcaactcccagtccataatgaaataaaagttaatgcaattgtttt 623
Query: 425 tgtttctgtttgaagggttttaaaaaataaattgtgagagttcatgttgatcagattgaa 484
||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 624 tgtttctttttgaagggttttaaaaaataaattgtgagagttcacattgatcggattgaa 683
Query: 485 aatcacctaggagtttggaaagcatactccttggt 519
|||||||||||||||||||||||||||||||||||
Sbjct: 684 aatcacctaggagtttggaaagcatactccttggt 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space: 462172
Effective search space used: 462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_k21.g1 MSMg01no539_k21.g1 CHROMAT_FILE:
MSMg01no539_k21.g1 PHD_FILE: MSMg01no539_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:43 2005
(563 letters)
>mm_chr8_130599720_130600682
Length = 963
Score = 1058 bits (547), Expect = 0.0
Identities = 559/563 (99%)
Strand = Plus / Minus
Query: 1 cccaggctttgaattgctggcacaaagtatctgactacacagtcaaaagaataaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 cccaggctttgaattgctggcacaaagtatctgactacacagtcaaaagaataaggagaa 704
Query: 61 ataagcaccactggttcactcttatgtggaaatagcaatcgtaaatacgagagtgaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ataagcaccactggttcactcttatgtggaaatagcaatcgtaaatacgagagtgaaaga 644
Query: 121 atcgaaatagtatggtagtcctaaacctaagcacttcctctttgtttcaacaggaggtac 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atcgtaatagtatggtagtcctaaacctaagcacttcctctttgtttcaacaggaggtac 584
Query: 181 tatggacacagtaccagtgtgtcagagaggaagctgcaccaatgcccagagaggactgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tatggacacagtaccagtgtgtcagagaggaagctgcaccaatgcccagagaggactgtg 524
Query: 241 gaggaaaggatcaacatgggaaaggggaaactattcaggagagttatccttggaaataaa 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaagaaaggatcaacatgggaaaggggaaactattcaggagagttatccttggaaataaa 464
Query: 301 tttcaaagcaagacgtagacaagatggttcaatcttcatgggaggccttagatcttctcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tttcaaagcaagacgtagacaagatggttcaatcttcatgggaggccttagatcttctcc 404
Query: 361 ttagttattgctataccatgcccatcataatcagtttttcctgggttaaccataatgaga 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttagttattgctgtaccatgcccatcataatcagtttttcctgggttaaccataatgaga 344
Query: 421 ccttacattttgggacctggtgtttgtatctacaatatgtggggcacagacagtctcagc 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccttgcattttgggacctggtgtttgtatctacaatatgtggggcacagacagtctcagc 284
Query: 481 cgaatacctatgtttcagagttgacatggggcatacacactcagcagaatacctatgtta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cgaatacctatgtttcagagttgacatggggcatacacactcagcagaatacctatgtta 224
Query: 541 caaagttaccaaggtcacagcct 563
|||||||||||||||||||||||
Sbjct: 223 caaagttaccaaggtcacagcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
