Query= MSMg01no539_o15.b1 MSMg01no539_o15.b1 CHROMAT_FILE:
MSMg01no539_o15.b1 PHD_FILE: MSMg01no539_o15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:02 2005
(294 letters)
>mm_chr8_114698085_114698778
Length = 694
Score = 472 bits (244), Expect = e-137
Identities = 273/292 (93%), Gaps = 15/292 (5%)
Strand = Plus / Plus
Query: 3 gaattctcaaagatctgataaaatgagaacacacacacacacacacacacacacacacac 62
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattctcaaagaactgataaaatgagaacacacacacacacacacacacacacacacac 277
Query: 63 acacacacacacacacacacacaccctcgttctcactggagcatcgacttaccaatagga 122
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 278 acacacac---------------ccctcgttctcactggagcatcgacttaccaatagga 322
Query: 123 tagaggcgaaataaaaatgttctctggtcacttctcgattgcaaacacatttgtgggatt 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 tagaggcgaaataaaaatgttctctggtcacttctcgattgcaaacacatttatgggatt 382
Query: 183 cacgcactgtctttttgacttatcccccaataagcacagaggacagaatgccgagttcag 242
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 cacgcactgtctttttgacttatcccccaataagcacagaggacagaatgccaagttcag 442
Query: 243 ggaaagcaattttgcaggaggccaagatagtatgttctgatctcgcaatgtt 294
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 443 ggaaagcaattttgcaggaggccaagattgtatgttctgatctcgcaatgtt 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space: 195225
Effective search space used: 195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no539_o15.g1 MSMg01no539_o15.g1 CHROMAT_FILE:
MSMg01no539_o15.g1 PHD_FILE: MSMg01no539_o15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:02 2005
(668 letters)
>mm_chr8_114860532_114861599
Length = 1068
Score = 1263 bits (653), Expect = 0.0
Identities = 665/669 (99%), Gaps = 2/669 (0%)
Strand = Plus / Minus
Query: 1 cctcctattgggcagccctgaagtccaattagacagcctttggttatccactcctagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 cctcctattgggcagccctgaagtccaattagacagcctttggttatccactcctagata 857
Query: 61 aagagttaaaagtggtcagtgactcctgaaaagagaccattagtgtcccccaggaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 aagagttaaaagtggtcagtgactcctgaaaagagaccattagtgtcccccaggaacaag 797
Query: 121 cttccacattccacataagatgctgagttccaggtagtcagtcctggatacatgtatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 cttccacattccacataagatgctgagttccaggtagtcagtcctggatacatgtatcta 737
Query: 181 caagtcatgcttagtggacttgctaagctgaatatgcatgtatgcatatacacacatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caagtcatgcttagtggacttgctaagctgaatatgcatgtatgcatatacacacatata 677
Query: 241 taattgcatgtatgcaacaaaaataattaaagaagagattatgaattttggaggggggac 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taattgcatgcatgcaacaaaaataattaaagaagagattatgaattttggaggggggac 617
Query: 301 ataggaggggcttggagaaggagtgagagggttacagatataatgcttgtgggcaaagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ataggaggggcttggagaaggagtgagagggttacagatataatgcttgtgggcaaagct 557
Query: 361 ctcaaaaaacaaaaactg-ttttttttaattgttagattccctcttctgatgtagaagaa 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctcaaaaaacaaaaactggttttttttaattgttagattccctcttctgatgtagaagaa 497
Query: 420 tcaaaatataacatctgtataaaaatttttaaacgcatgctttagaagaacaaggacaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tcaaaatataacatctgtataaaaatttttaaacgcatgctttagaagaacaaggacaat 437
Query: 480 gaaagaaaagaaaaaatgagatgaactttggaaaatgttcaccatttagaagaagcacac 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagagaaaagaaaaaatgagatgaactttggaaaatgttcaccatttagaagaagcacac 377
Query: 540 atccatccgaaagcacctagtaaaacggttttttaaaatatattagaagcaatcagggga 599
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 376 atccatccgaaagcacctagtaaaacggttttt-aaaatatattagaagcaatcagggga 318
Query: 600 aaaagcaaataaggagaaatgaatgactgttcatatagaagcagcacgggttggaaggcc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaagcaaataaggagaaatgaatgactgttcatatagaagcagcacgggttggaaggcc 258
Query: 660 attgccttt 668
|||||||||
Sbjct: 257 attgccttt 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
