BAC Information

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BAC

Clone NameMSMg01-540L11
Chromosome8 (Build37)
Map Location 114,793,462 - 114,793,790
singlet/doubletsinglet
Overlap geneLOC100042040
Upstream geneRfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
Downstream geneCntnap4, LOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540L11.T7 (MSMg01no540_l11.b1)MSMg01-540L11.TJ (MSMg01no540_l11.g1)
ACCAG606902AG606903
length715720
length of high quality
(start - end)
333 (49 - 381)582 (79 - 660)
definitionCHROMAT_FILE: MSMg01no540_l11.b1 PHD_FILE: MSMg01no540_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:05 2005CHROMAT_FILE: MSMg01no540_l11.g1 PHD_FILE: MSMg01no540_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATCTTGCCCACTACTCTCTGACCTTCCATTAATTGTCAGC
GTTTCTCTTATGCCATGCATATCCCACAGTCCCGCCGACTGCCTCTGATA
TGCAAAATCCCACTTATTCTGAATTGAGTAAAAGTGAAGGGCTGGAGAGA
TGCTGAGCACACGCAGGCACACAGTTCAGGGCACAGGCAGCAGACAGCTC
TTCCCTGCCTGCAACTCCAGCTCCGGGGGATCAGGCTTCCTCTTCTGGCC
TCTGGGGGCACCTGTACACTTGTGCACACAGCCATTCACAGGCACACACA
GGCACCTGCACACATGTGCACACAGCCATTCACAGGCACACACAGGCACC
TGCACACTTGTGCACACAGCCATTCACAGGCACACACAGGCACCTGCACA
CTTGTGCACACAGCCATTCACAGGCACATAATGAGATTTTTTAAAAGAAG
TTGGTAAGACCCTATGTAACTGTTTAATACTTTCCCGAATTTCACCTCAC
CCCACGTGTCTTTTATGAGCCGCACTTTCCGACAGAGTTAAAAGAATTTT
TTTTCCTACGATAAAAGTGGTTTTTTACCCTTAAACACGTGTACCCCATG
AAGGCAACCACACCCATGTATACCCCCGTGGCTGGCCACACATCTGTGTC
TAAGTGACTTCCTCN
NNCCCCATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCC
TTTCTCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCC
TTGCAGAAATTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT
TACAACACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA
TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCT
GGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGG
AGATAAGTATGGATCGATTCGCATTCTTCGACATGATAACAACCAGTTGT
GCCAGCACCATTTGTTGAAAATGCTTTCTTTTTTCCACTGGATGGTTTTA
GCTCCCTTGTCAAAGATCAAGTGACCATAAGTGTGTGGGTTCATTTCTGC
ATCTTCAATTCTATTCCATTGGTCTAGTTGTTCTACTGAGTTTTATCAAC
TTCCTTGTTTCTTTCAAGGGGAAGGCTGTTTGTTTTATTTTTGAGTTTAG
ATTTTTGGTTGGTGGGTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_l11.b1 MSMg01no540_l11.b1 CHROMAT_FILE:
MSMg01no540_l11.b1 PHD_FILE: MSMg01no540_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:05 2005
         (333 letters)



>mm_chr8_114793258_114793990
          Length = 733

 Score =  605 bits (313), Expect = e-177
 Identities = 325/329 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatcttgcccactactctctgaccttccattaattgtcagcgtttctcttatg 64
           ||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatcctggatactactctctgaccttccattaattgtcagcgtttctcttatg 264

                                                                       
Query: 65  ccatgcatatcccacagtcccgccgactgcctctgatatgcaaaatcccacttattctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccatgcatatcccacagtcccgccgactgcctctgatatgcaaaatcccacttattctga 324

                                                                       
Query: 125 attgagtaaaagtgaagggctggagagatgctgagcacacgcaggcacacagttcagggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgagtaaaagtgaagggctggagagatgctgagcacacgcaggcacacagttcagggc 384

                                                                       
Query: 185 acaggcagcagacagctcttccctgcctgcaactccagctccgggggatcaggcttcctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acaggcagcagacagctcttccctgcctgcaactccagctccgggggatcaggcttcctc 444

                                                                       
Query: 245 ttctggcctctgggggcacctgtacacttgtgcacacagccattcacaggcacacacagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctggcctctgggggcacctgtacacttgtgcacacagccattcacaggcacacacagg 504

                                        
Query: 305 cacctgcacacatgtgcacacagccattc 333
           |||||||||||||||||||||||||||||
Sbjct: 505 cacctgcacacatgtgcacacagccattc 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)