CCCCCNCCNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGCGTAAAGCTCTACAGTGTGAATTTAGCATGG
TTTATTTATCCACTTTCCTGTCCATAGACACTTGAGATATTCCAGTATTT
TCTTATGACCCTATGGATGTTGCTGGGTCAGGAGAGCAAATAAGCATGTT
TACAAGGTGAGAACTGCTTGATCCTGGATAGACACACCAACCTTAGTACA
CAATGCAAACTGTTTTCCAAATTGCTTCTGTGCTGTTGTCAATAGTGTCT
GGGGTTCGACATGCTTACACACTGGCTAACAGTAGCTCTTGTCAGTCTTC
AATTGCAGCAGTAGAGGAGAGGGACTTGGCATTTAATTTTAATTTTAATT
TGGATTCCCTGGTGACTAATGAGATTGGACCTCCTTCTGTGATTTTCTTC
ACAATTTGAGCACCTCTCTAATGAACTATCCTTCAAATAGCCTCAGCTAC
TTTCCAGTGGGGCTTTTGTCTCCGACTTTGACTTTCAGTTTAAAAAAATA
ATGCCATATATATATATATATATATATACATATATATATATATATATGAT
GTAATTCTTTGTGTGTGTGTGCTGGTTTTACAATAATATCAAAATACAAA
ACGCAGGAATATAGATAAGAAAAATGTGAAAGACATTTGTGTACTAAATT
GTGATACATAATAATAAGGGAT

CCAANNCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCAAGCACAGAC
ATTGCTTGAAAGGCATTATTTCCCCCCAAATAAGTTCGTGTAGTTGACAA
AGCTCAAGAGTAATTTCCGCACCCCACAGCCTCACCTATGACGCAAAGCG
TACAAACAAATCTAAAGAGGAGGCAGCTGCTGCTCTGACAGAGATGCCAT
CTTTTCAAAACATCCCCTGCCATACGCTTCTTACTCAAATGTGCACCCTA
TGAGTGGCGTTGCCTCTTCAGAGTTTGGAAACAGCTGAGTTGTACTGGGG
ATGTATAGGCAGGAACTGTGAAGTGAGCTTTAATTTCCTTGTGCCTGATG
ACATCAGCTTTAAAGCAAGGACACCTTCTTCATGGCACTTTAGACCGTAT
TCCCTCCTTCCATCCTTCCTTTACTTCCTTCTTCCTTCCTTCCTTTCTGC
TTTCTTTCCTTCCCTCCCCCTTCTTTCCTTTTCCTCTCCTCCCCTCCTCC
CTCCCTTCCTCTCCTCCTCCATCTCTCCCTTCCCTCCTCCCTCCCTCCCT
CCCAACTTCCCTCCCTTCCTTCCTTTCTTCCTCTTTTTTCTTCTTTCTTC
CTTCCTCTCCCTCTCTGCTATGGATAGAACCCTACTTTGTGCTCCCACCA
GAGGCCATGTGCCTTTTAGTTAGCTGCGTC

Query= MSMg01no541_f03.g1 MSMg01no541_f03.g1 CHROMAT_FILE:
MSMg01no541_f03.g1 PHD_FILE: MSMg01no541_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:55 2005
         (573 letters)



>mm_chr8_130706303_130707272
          Length = 970

 Score =  965 bits (499), Expect = 0.0
 Identities = 519/531 (97%), Gaps = 11/531 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcaagcacagacattgcttgaaaggcattatttccccccaaataagttcgtgtagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgcaagcacagacattgcttgaaaggcattatttccccccaaataagttcgtgtagtt 502

                                                                       
Query: 61  gacaaagctcaagagtaatttccgcaccccacagcctcacctatgacgcaaagcgtacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacaaagctcaagagtaatttccgcaccccacagcctcacctatgacgcaaagcgtacaa 442

                                                                       
Query: 121 acaaatctaaagaggaggcagctgctgctctgacagagatgccatcttttcaaaacatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaatctaaagaggaggcagctgctgctctgacagagatgccatcttttcaaaacatcc 382

                                                                       
Query: 181 cctgccatacgcttcttactcaaatgtgcaccctatgagtggcgttgcctcttcagagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 cctgccatacgcttcttactcaaatgtgcaccctatgagtggcgttgcctcttcagaatt 322

                                                                       
Query: 241 tggaaacagctgagttgtactggggatgtataggcaggaactgtgaagtgagctttaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaaacagctgagttgtactggggatgtataggcaggaactgtgaagtgagctttaatt 262

                                                                       
Query: 301 tccttgtgcctgatgacatcagctttaaagcaaggacaccttcttcatggcactttagac 360
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 261 tccttgtgcctgatgacatcagctttaaagcaaggacac---cttcatggcactttagac 205

                                                                       
Query: 361 cgtattccctccttccatccttcctttacttccttcttccttccttcctttctgctttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cgtattccctccttccatccttcctttacttccttcttccttccttcctttctgctttct 145

                                                                       
Query: 421 ttccttccctcccccttctttccttttcctctcctcccctcctccctcccttcctctcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttccttccctcccccttctttccttttcctctcctcccctcctccctcccttcctctcct 85

                                                              
Query: 481 cctccatctctcccttccctcctccctccctccctcccaacttccctccct 531
           ||||||||||||||||||||    ||||||||||||||    |||||||||
Sbjct: 84  cctccatctctcccttccct----cctccctccctccc----tccctccct 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 970
Length adjustment: 10
Effective length of query: 563
Effective length of database: 960
Effective search space:   540480
Effective search space used:   540480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)